Hello,
Thanks for letting me know regarding running fsPalm in your previous message. My next question is - what command can we use in Freesurfer that can run multiple comparison testing for subcortical regions? If not fsPalm, is there another function that will perform this?
Thanks, Amritha
Amritha Harikumar Clinical Research Coordinator Holt Emotion and Social Neuroscience Lab Department of Psychiatric Neuroimaging Martinos Center for Biomedical Imaging Massachusetts General Hospital ___________________________ 149 13th Street, Rm 2620A Charlestown, MA 02129 Phone: 617-724-3283
On Sep 3, 2019, at 6:06 AM, freesurfer-request@nmr.mgh.harvard.edu wrote:
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Today's Topics:
- OHBM International Mentoring Programme Sign-up {Disarmed} (Meena M. Makary)
- PALM Analysis (Harikumar, Amritha)
- Re: PALM Analysis (Greve, Douglas N.,Ph.D.)
- Discrepancy between thresholded surface and cluster labels (Bronwyn Overs)
- Reconall with no-MPRAGE T1w image? (Rovai Antonin)
Message: 1 Date: Mon, 2 Sep 2019 12:19:45 -0400 From: "Meena M. Makary" meena.magharious@gmail.com Subject: [Freesurfer] OHBM International Mentoring Programme Sign-up {Disarmed} To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: CAF4GKtcDD7AdkJFUhQ9KTq_ypOhEo+5Z_Qn+wz6u4kFrvjv=+Q@mail.gmail.com Content-Type: text/plain; charset="utf-8"
External Email - Use CautionHi all,
Between September 1st and September 31st 2019, registration for the fourth round of the Online International Mentoring Programme organized and coordinated by the OHBM Student and Postdoc Special Interest Group https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.ohbmtrainees.com/mentoring-programme/ will take place. In the programme, every OHBM member can become an (online) mentor or a mentee to another OHBM member(s) for a period of approximately one year (October-June). During this time, the mentor can support the mentee to grow in academia by providing advice on topics such as?but not limited to?personal development, grant writing, and work-life balance. In response to the feedback from previous participants and the increased interest of mentees in industry, we have also invited a number of mentors from industry to join us for this new round.
If you are interested in being a mentor and/or mentee, please fill out this short registration form https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.surveymonkey.com/r/WNBTZXC and you will be contacted with further details.
If you participated in any of the previous rounds and would like to further take part in the programme, you have two possible ways (It is possible to choose both options):
- If you would like to continue being paired with your current
mentors/mentees, please first discuss this with your mentoring partner. In this case, please do not re-subscribe for the programme and please delegate the mentee to fill in this feedback form https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.surveymonkey.com/r/VH95VY8 for us. 2. If you would like to apply for new mentors/mentees, you will be able to do so using the registration link above.
Please feel free to forward this message to your colleagues. Please also forward this email to former researchers working in industry, if you know any, as we are still looking for more industry representatives to join the programme as mentors this year.
We would like to thank all the OHBM mentors and mentees who participated in the previous three rounds of the programme! The third round of the programme is now ending. We hope that most of you had an opportunity to meet in person during the OHBM Annual Meeting in Rome. If you have feedback for us, please contact us at ohbmtrainees@gmail.com https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=mailto:ohbmtrainees@gmail.com. Please share any comments which might help to further improve our programme!
To find out more about the programme, please visit the OHBM Student and Postdoc SIG website https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.ohbmtrainees.com/mentoring-programme/ and check our previous publication https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://onlinelibrary.wiley.com/doi/full/10.1111/ejn.14320. If you have any questions about the programme, please contact us at ohbmtrainees@gmail.com https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=mailto:ohbmtrainees@gmail.com .
We hope to welcome you in the programme very soon!
Best regards, ? *Meena M. Makary, Ph.D.* Assistant Professor | Cairo University http://bmes.cufe.edu.eg/ Postdoctoral Fellow | Radiology, Harvard Medical School https://connects.catalyst.harvard.edu/Profiles/display/Person/176550 Postdoctoral Fellow | Athinoula A. Martinos Center, MGH https://www.nmr.mgh.harvard.edu/user/4550386 Career Development and Mentoring Manager | OHBM Student and Postdoc SIG https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=3449
mri_glmfit-sim will do it, GRF or permutation
On 9/4/19 1:33 PM, Harikumar, Amritha wrote:
Hello,
Thanks for letting me know regarding running fsPalm in your previous message. My next question is - what command can we use in Freesurfer that can run multiple comparison testing for subcortical regions? If not fsPalm, is there another function that will perform this?
Thanks, Amritha
Amritha Harikumar Clinical Research Coordinator Holt Emotion and Social Neuroscience Lab Department of Psychiatric Neuroimaging Martinos Center for Biomedical Imaging Massachusetts General Hospital ___________________________ 149 13th Street, Rm 2620A Charlestown, MA 02129 Phone: 617-724-3283
On Sep 3, 2019, at 6:06 AM, freesurfer-request@nmr.mgh.harvard.edu wrote:
Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu
You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..."
Today's Topics:
- OHBM International Mentoring Programme Sign-up {Disarmed} (Meena M. Makary)
- PALM Analysis (Harikumar, Amritha)
- Re: PALM Analysis (Greve, Douglas N.,Ph.D.)
- Discrepancy between thresholded surface and cluster labels (Bronwyn Overs)
- Reconall with no-MPRAGE T1w image? (Rovai Antonin)
Message: 1 Date: Mon, 2 Sep 2019 12:19:45 -0400 From: "Meena M. Makary" meena.magharious@gmail.com Subject: [Freesurfer] OHBM International Mentoring Programme Sign-up {Disarmed} To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: CAF4GKtcDD7AdkJFUhQ9KTq_ypOhEo+5Z_Qn+wz6u4kFrvjv=+Q@mail.gmail.com Content-Type: text/plain; charset="utf-8"
External Email - Use CautionHi all,
Between September 1st and September 31st 2019, registration for the fourth round of the Online International Mentoring Programme organized and coordinated by the OHBM Student and Postdoc Special Interest Group https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.ohbmtrainees.com/mentoring-programme/ will take place. In the programme, every OHBM member can become an (online) mentor or a mentee to another OHBM member(s) for a period of approximately one year (October-June). During this time, the mentor can support the mentee to grow in academia by providing advice on topics such as?but not limited to?personal development, grant writing, and work-life balance. In response to the feedback from previous participants and the increased interest of mentees in industry, we have also invited a number of mentors from industry to join us for this new round.
If you are interested in being a mentor and/or mentee, please fill out this short registration form https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.surveymonkey.com/r/WNBTZXC and you will be contacted with further details.
If you participated in any of the previous rounds and would like to further take part in the programme, you have two possible ways (It is possible to choose both options):
- If you would like to continue being paired with your current
mentors/mentees, please first discuss this with your mentoring partner. In this case, please do not re-subscribe for the programme and please delegate the mentee to fill in this feedback form https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.surveymonkey.com/r/VH95VY8 for us. 2. If you would like to apply for new mentors/mentees, you will be able to do so using the registration link above.
Please feel free to forward this message to your colleagues. Please also forward this email to former researchers working in industry, if you know any, as we are still looking for more industry representatives to join the programme as mentors this year.
We would like to thank all the OHBM mentors and mentees who participated in the previous three rounds of the programme! The third round of the programme is now ending. We hope that most of you had an opportunity to meet in person during the OHBM Annual Meeting in Rome. If you have feedback for us, please contact us at ohbmtrainees@gmail.com https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=mailto:ohbmtrainees@gmail.com. Please share any comments which might help to further improve our programme!
To find out more about the programme, please visit the OHBM Student and Postdoc SIG website https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://www.ohbmtrainees.com/mentoring-programme/ and check our previous publication https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=https://onlinelibrary.wiley.com/doi/full/10.1111/ejn.14320. If you have any questions about the programme, please contact us at ohbmtrainees@gmail.com https://www.humanbrainmapping.org/i4a/etrack/track.cfm?rType=2&campaignID=3640&contactID=36498&origURL=mailto:ohbmtrainees@gmail.com .
We hope to welcome you in the programme very soon!
Best regards, ? *Meena M. Makary, Ph.D.* Assistant Professor | Cairo University http://bmes.cufe.edu.eg/ Postdoctoral Fellow | Radiology, Harvard Medical School https://connects.catalyst.harvard.edu/Profiles/display/Person/176550 Postdoctoral Fellow | Athinoula A. Martinos Center, MGH https://www.nmr.mgh.harvard.edu/user/4550386 Career Development and Mentoring Manager | OHBM Student and Postdoc SIG https://www.humanbrainmapping.org/i4a/pages/index.cfm?pageid=3449
freesurfer@nmr.mgh.harvard.edu
-
Greve, Douglas N.,Ph.D. -
Harikumar, Amritha