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Is there a way to pass an already corrected brainmask file or force the function to do that so all the subsequent surf are created accordingly without using after mri_binarize?

On Fri, 5 Jun 2020, 7:52 p.m. Douglas N. Greve, dgreve@mgh.harvard.edu wrote:

mri_watershed creates brainmask.mgz, and the inner_skull should fit around that.

On 6/3/2020 9:36 AM, Edoardo Pinzuti wrote:

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Dear Freesurfer community,

I have a question regarding the mri_watershed. Is the inner_skull extracted from the brain.mgz which gets masked by the brainmask.mgz automatically?

Thanks

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