You can binarize the aseg.mgz with mri_binarize and spec the "binval" and "match" values to be that of the segmentation you are interested in. Then load as you would the aseg.mgz

doug

asaf achiron wrote:

Hi group, i am using for visualisation this commend: tkmedit bert norm.mgz -segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt

However, i would like to view *only* the thalamus.

how can i do that?

thank you,

Asaf

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