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Maybe you already know this, but just in case: mris_compute_lgi is a shell script, so you can open it in an editor and check what it does.cat

The output of the following command gives a good first impression:

cat `which mris_compute_lgi` | grep -B 8 MATLAB

It seems to prepare the arguments for a number of matlab functions, write the full command including args to temporary files and then pipes the contents into '${MATLAB} -display iconic -nojvm -nosplash', where ${MATLAB} is set at the beginning of the script to be the output of `getmatlab`.

I'm not sure whether that helps, but I think one could try to create an Octave version of the script from that.

On March 5, 2019 at 8:35 PM Natasha Sharma w1200533@apps.losrios.edu wrote:

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Hello all,

Is there a way to run LGI commands listed below using Octave instead of Matlab? I've read somewhere on the forums of being able to get Freesurfer to use Octave instead of Matlab in FSFAST but I'm not sure if it will work with the commands below. Could I please get instructions on how to do this?

mris_compute_lgi --i lh.pial mris_compute_lgi --i rh.pial

Any help is appreciated! Thank you. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer