Dear Freesurfer experts,
I have used the following commandline to generate the final statistics in my analysis: mri_segstats --seg aseg.mgz --ctab-default --i suvr.nii --mask mask.nii --sum stats.dat
The final output of this command is (attached). Depedning on the anatomical location of the mask, I expect that I will get two structures in the stats file. What is the "unknown" label means? is it CSF? Do I need to include it in my next statistcal analses?
I highly appreciate your input!
Best, John
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That is everything that has a segmentation number = 0. You can exclude it with, --excludeid 0
On 02/24/2017 10:08 AM, John Anderson wrote:
Dear Freesurfer experts, I have used the following commandline to generate the final statistics in my analysis: mri_segstats --seg aseg.mgz --ctab-default --i suvr.nii --mask mask.nii --sum stats.dat
The final output of this command is (attached). Depedning on the anatomical location of the mask, I expect that I will get two structures in the stats file. What is the "unknown" label means? is it CSF? Do I need to include it in my next statistcal analses?
I highly appreciate your input!
Best, John
Sent with ProtonMail https://protonmail.com Secure Email.
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