Dear Freesurfer experts,

we used recon-all -s <subid> -i <T1> -FLAIR <FLAIR> -FLAIRpial -all on cca 100 subjects. About 10 of them have this pial surface error (see below). Pial surface on temporal lobes is erroneous. White matter seems pretty much OK to me. Would for example changing of -ghi parameter in mri_segment expert option help?

What would be the best way to handle this?

Thanks!

Patricia

[image: Vnorený obrázok 1]