Dear Freesurfers
Hi
I am trying to project a subcortical volume , that I manually made, from fsaverage to individual subject's space.
I was wondering if it's ok if I use mri_vol2vol for this purpose. I copied my command below:
mri_vol2vol --mov ./${ROI}/ROI4.mgz --targ $SUBJECTS_DIR/fsaverage/mri/orig.mgz --o $SUBJECTS_DIR/${subj}/mri/${ROI}.mgz --talres 2 --interp nearest --regheader
Thanks
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
that should work
On 1/28/19 2:44 PM, Nasiriavanaki, Zahra wrote:
Dear Freesurfers
Hi
I am trying to project a subcortical volume , that I manually made, from fsaverage to individual subject's space.
I was wondering if it's ok if I use mri_vol2vol for this purpose. I copied my command below:
mri_vol2vol --mov ./${ROI}/ROI4.mgz --targ $SUBJECTS_DIR/fsaverage/mri/orig.mgz --o $SUBJECTS_DIR/${subj}/mri/${ROI}.mgz --talres 2 --interp nearest --regheader
Thanks
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thank you very much
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu Sent: Monday, January 28, 2019 3:17:36 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_vol2vol
that should work
On 1/28/19 2:44 PM, Nasiriavanaki, Zahra wrote:
Dear Freesurfers
Hi
I am trying to project a subcortical volume , that I manually made, from fsaverage to individual subject's space.
I was wondering if it's ok if I use mri_vol2vol for this purpose. I copied my command below:
mri_vol2vol --mov ./${ROI}/ROI4.mgz --targ $SUBJECTS_DIR/fsaverage/mri/orig.mgz --o $SUBJECTS_DIR/${subj}/mri/${ROI}.mgz --talres 2 --interp nearest --regheader
Thanks
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu