In 5.0.0 I was used to dealing with brainmask.mgz files. in 5.2.0, I have so far been able to generate a T1.mgz, which to my eyes, looks OK. However, the resulting surf folder is empty and I'm not sure why. Log file attached.
jon
Jon,
the log indicates that mri_em_register was running. does 'top' show if mri_em_register is running? it can take quite a while (upwards of 40 minutes), and the log can sit unchanged for several minutes during the section shown in your log.
Nick
On Mon, 2013-01-14 at 15:25 -0500, Jonathan Holt wrote:
In 5.0.0 I was used to dealing with brainmask.mgz files. in 5.2.0, I have so far been able to generate a T1.mgz, which to my eyes, looks OK. However, the resulting surf folder is empty and I'm not sure why. Log file attached.
jon
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
It looks like it just started running too
On Jan 14, 2013, at 6:05 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
Jon,
the log indicates that mri_em_register was running. does 'top' show if mri_em_register is running? it can take quite a while (upwards of 40 minutes), and the log can sit unchanged for several minutes during the section shown in your log.
Nick
On Mon, 2013-01-14 at 15:25 -0500, Jonathan Holt wrote:
In 5.0.0 I was used to dealing with brainmask.mgz files. in 5.2.0, I have so far been able to generate a T1.mgz, which to my eyes, looks OK. However, the resulting surf folder is empty and I'm not sure why. Log file attached.
jon
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Jonathan Holt -
Nick Schmansky