Hi Bruce,
I have uploaded all the data to the server. The command that I run is 'recon-all -all -s $s -hippocampal-subfields-T1T2 $s/T2/*.mgz T1T2'.
It would be great if you could keep us updated on how the fixing is going.
Thanks!
--------------------------------------------------------------------------------------------------------------------------------------- Message: 1 Date: Mon, 21 Dec 2015 10:38:08 -0500 (EST) From: Bruce Fischl fischl@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FW: segmentation fault (core dumped) To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: alpine.LRH.2.20.1512211037340.22599@gate.nmr.mgh.harvard.edu Content-Type: text/plain; charset="iso-8859-1"
Hi Fengji
hmmm, I don't remember ever seeing a core dump in mri-segstats before. If you upload the entire subject dir (tarred and gzipped) to our ftp site we will fix it.
cheers Bruce
----- Fengji
what server did you upload it to? What is the name of the file? Make sure to include the entire output folder, not just the input files
On 12/21/2015 03:33 PM, Fengji Geng wrote:
Hi Bruce,
I have uploaded all the data to the server. The command that I run is 'recon-all -all -s $s -hippocampal-subfields-T1T2 $s/T2/*.mgz T1T2'.
It would be great if you could keep us updated on how the fixing is going.
Thanks!
Message: 1 Date: Mon, 21 Dec 2015 10:38:08 -0500 (EST) From: Bruce Fischl fischl@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FW: segmentation fault (core dumped) To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: alpine.LRH.2.20.1512211037340.22599@gate.nmr.mgh.harvard.edu Content-Type: text/plain; charset="iso-8859-1"
Hi Fengji
hmmm, I don't remember ever seeing a core dump in mri-segstats before. If you upload the entire subject dir (tarred and gzipped) to our ftp site we will fix it.
cheers Bruce
Fengji
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Fengji Geng