Hi Cyrus,

You can run the following script:

compute_label_volumes.csh

It will list all the labels that are in your segmentation file (and also tell you the number of voxels colored by this label and th etotal volume).

Lilla

On Tue, 5 Jun 2012, Sarosh, Cyrus wrote:

Hello,

I was hoping somebody could help me out. I am trying to create a label file for the aparc+aseg file. All I’m wanting is the pixel value and the label. I know there is the FreeSurferColorLUT.txt file which contains this information, but looking at this file I can tell that all of these labels aren’t included in every file, so I’m trying to create a file like this for each individual MR I use only containing the labels needed for each individual scan. I don’t know if this is possible, but hopefully it is and somebody could give me the commands to use to generate this file? Thanks for your help.

Cyrus

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