When you set up the directory, you should have created a filed called "subjectname" in the CA directory. This should be a simple ascii text file with the name of the FreeSurfer subject (as found in $SUBJECTS_DIR). Is that file there and does it have the right name in it?

doug

Natalia Zaretskaya wrote:

Hi all,

I am doing retinotopy with freesurfer and fsfast on Mac OSX. Made the data directory structure as required.

When I try to coregister anatomical and structural data with tkregister-sess -sf sessid -regheader I get the following message:

---

tkregister-sess logfile is /applications/freesurfer/retinotopy/log/tkregister-sess.log

---

Session: /applications/freesurfer/retinotopy/CA ---------------- Tue Oct 13 13:47:18 CEST 2009 is not in SUBJECTS_DIR SUBJECTS_DIR is /Applications/freesurfer//subjects

I would appreciate any help/hints on what might have gone wrong. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer