External Email - Use Caution
Dear all,
I recently ran recon-all on data using the T2pial flag to improve the pial surface (using version 6.0). The T2 images seemed to improve the pial surfaces; however, when I extract stats using the Destrieux atlas, I get zero values for several regions and for BrainSegVolNotVent and eTIV. If I run recon-all without the T2 image, I get data for these regions, BrainSegVolNotVent, and eTIV. Has anyone run into similar issues using the T2pial flag or have an idea of what may be causing this problem?
Thank you in advance for your help!
Morgan
I have not. Can you send the recon-all.log file?
On 2/1/19 6:01 PM, Morgan Botdorf wrote:
External Email - Use Caution
Dear all,
I recently ran recon-all on data using the T2pial flag to improve the pial surface (using version 6.0). The T2 images seemed to improve the pial surfaces; however, when I extract stats using the Destrieux atlas, I get zero values for several regions and for BrainSegVolNotVent and eTIV. If I run recon-all without the T2 image, I get data for these regions, BrainSegVolNotVent, and eTIV. Has anyone run into similar issues using the T2pial flag or have an idea of what may be causing this problem?
Thank you in advance for your help!
Morgan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Greve, Douglas N.,Ph.D. -
Morgan Botdorf