External Email - Use Caution
Hello FreeSurfer team,
I am trying to run the sclimbic tool on our FreeSurfer processed images (from the Martinos center). For some unknown reason I keep getting the same problem:
Excluding seg [853]
Using CPU
Illegal instruction (core dumped)
Not sure what this means? I have sourced /usr/local/freesurfer/nmr-dev-env and set the SUBJECTS_DIR correctly. I tried with the - - s option referring to the FreeSurfer processed subject as well as the - - i option, referring to the orig.mgz image. Using the nifti image or the mgz image doesn’t make a difference either.
Any suggestions on what the problem may be or how to resolve this?
Thank you All the best Heidi
External Email - Use Caution
Can you try the 7.4.1 version? Can you also send your full command line and terminal output?
On 8/20/2023 2:57 PM, Jacobs, Heidi I.,PHD wrote:
External Email - Use Caution
Hello FreeSurfer team,
I am trying to run the sclimbic tool on our FreeSurfer processed images (from the Martinos center).
For some unknown reason I keep getting the same problem:
Excluding seg [853]
Using CPU
Illegal instruction (core dumped)
Not sure what this means? I have sourced /usr/local/freesurfer/nmr-dev-env and set the SUBJECTS_DIR correctly.
I tried with the - - s option referring to the FreeSurfer processed subject as well as the - - i option, referring to the orig.mgz image.
Using the nifti image or the mgz image doesn’t make a difference either.
Any suggestions on what the problem may be or how to resolve this?
Thank you
All the best
Heidi
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freesurfer@nmr.mgh.harvard.edu
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Jacobs, Heidi I.,PHD