got it worked...thanks Dr. D

----- Original Message ----- From: "Douglas N Greve" greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, June 21, 2012 4:31:25 PM Subject: Re: [Freesurfer] bbregister

You should have an environment variable called FSLDIR set to the location of where you have FSL installed. doug

On 06/21/2012 04:16 PM, Kushal Kapse wrote:

hi fellow FS users,

i am running bbregister (bbregister --s 083010_004498 --mov 083010_004498/bbl1_frac2back1_231.nii.gz --bold --reg register.dat --init-fsl).

it shows me following error: FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -27, ref det = -1 FSLDIR: Undefined variable.

i did run bbregister few weeks ago and it did run fine....but i am not able to understand this problem ....

please let me know if possible....

thanks kk _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer