External Email - Use Caution
Hello Freesurfer team, my group is interested in using the SAMSEG tool to evaluate white matter lesions in MCI patients. We would like to use a personalized atlas for the measure. We suppose that we need to use the flag --atlas but we don`t know if we need a generic atlas or we need an atlas at each subject' spaces.
Thanks in advance for your help.
The atlases used by samseg are very different from freesurfer GCAs, and the samseg-template creation is not an easily-accessible utility at the moment. Feel free to look through the GEMS code in the FS repository, but it might be some time before we have an easy-to-use samseg atlas building tool in freesurfer.
Best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Alberto Del Cerro Leon bertocerron@gmail.com Date: Wednesday, May 5, 2021 at 11:11 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] help with SAMSEG
External Email - Use Caution Hello Freesurfer team, my group is interested in using the SAMSEG tool to evaluate white matter lesions in MCI patients. We would like to use a personalized atlas for the measure. We suppose that we need to use the flag --atlas but we don`t know if we need a generic atlas or we need an atlas at each subject' spaces.
Thanks in advance for your help.
freesurfer@nmr.mgh.harvard.edu