Fixed. Forgot to upload some files. Thanks Doug.

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Wednesday, 13 September 2017 2:47 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Results display tool

Thanks Chris, this looks interesting and useful. I just tried

|P = cell(1, 2); T = cell(1, 2); for z = 1:2 P{z} = rand(31, 1) * 0.075; T{z} = rand(31, 1) * 5 - 3; end freesurfer_statsurf_p(P, T, 'dkt'); and got the error: Undefined function 'freesurfer_read_annot' for input arguments of type 'char'. Error in freesurfer_statsurf_loadsurfaces (line 59) [~, AnnotLabel{HemiIDX}, AnnotTable{HemiIDX}] = freesurfer_read_annot(fullfile(FreesurferSubjectsDir, 'fsaverage', 'label', [Hemi '.' LabelName '.annot'])); Error in freesurfer_statsurf_checkargs (line 104) [FSAverageV, FSAverageF, ValueVertexIDX, RGB] = freesurfer_statsurf_loadsurfaces(SurfType, FreesurferSeedType); Error in freesurfer_statsurf_p (line 45) [GroupLabels, ... anything I'm doing wrong? Welcome to the fun world of supporting software you provide for free! doug |

On 09/12/2017 05:31 AM, Chris Adamson wrote:

Freesurfer users,

I just wanted to advertise a set of display tools that I wrote for easy display, in MATLAB, of regional stats like p-values/effect sizes/arbitrary scalars with customisable masks for aparc, dkt, aparc.a2009s.

https://chrisadamsonmcri.github.io/freesurfer_statsurf_display

I hope people find it useful.

Chris.

---

This email has been scanned by the Symantec Email Security.cloud service. For more information please visit http://www.symanteccloud.com ______________________________________________________________________

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

______________________________________________________________________ This email has been scanned by the Symantec Email Security.cloud service. For more information please visit http://www.symanteccloud.com

If you have any questions, please contact MCRI IT Servicedesk for further assistance. ______________________________________________________________________

______________________________________________________________________ This email has been scanned by the Symantec Email Security.cloud service. For more information please visit http://www.symanteccloud.com ______________________________________________________________________