It just loads in a single file and creates a "table" with one row.
On 05/16/2012 02:02 PM, Rashmi Singh wrote:
Can you also let me know what does the following command do. Thanks, Rashmi.
On 5/16/12 12:58 PM, "Douglas N Greve"greve@nmr.mgh.harvard.edu wrote:
I was able to load both of those. Try this:
cd /opt/freesurfer/subjects/AA262.G1/stats asegstats2table -i aseg.stats -t test.dat
doug
On 05/16/2012 01:25 PM, Rashmi Singh wrote:
Doug, Attached are the aseg.stat files of the two different runs (AA262.G1 and AB054.G1) where I got the error message. Thanks Rashmi.
On 5/16/12 11:41 AM, "Douglas N Greve"greve@nmr.mgh.harvard.edu wrote:
Can you send me /opt/freesurfer/subjects/AA262.G1/stats/aseg.stats? Also, please remember to copy the list so that others can see the answer and so that others can help with the answer. thanks! doug
On 05/16/2012 11:56 AM, Rashmi Singh wrote:
Dough,
Yes, the stat files exist with all its content. I can individually import the text aseg files into xcell sheet, but I have 44 data files, so I was trying asegstat2table option. What do you think may be going wrong. The output file says that recon all completed without error for all my subject files.
Thanks, Rashmi.
Do those files exist? Do they have content in them? doug
On 05/15/2012 05:51 PM, Rashmi Singh wrote:
Hello, I am trying to get the asegmentation information after therecon-all run in the table form, but I am continuously getting the following error
asegstats2table --subjects AA262.G1 AA267.G2 AA304.G1 --measvolume --tablefile asegstats.txt SUBJECTS_DIR : /opt/freesurfer/subjects Parsing the .stats files ERROR: The stats file /opt/freesurfer/subjects/AA262.G1/stats/aseg.stats is not found or is too small to be a valid statsfile Use --skip flag to automatically skip bad stats files
I did try to use the skip option , but then , it skips all thefiles giving the same error. When I individually open the aseg files from the stats folder, those look fine to me.
Please advise. Rashmi.
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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This document may contain information covered under the Privacy Act, 5 USC 552(a), and/or the Health Insurance Portability and Accountability Act (PL 104-191) and its various implementing regulations and must be protected in accordance with those provisions. Healthcare information is personal and sensitive and must be treated accordingly. If this correspondence contains healthcare information it is being provided to you after appropriate authorization from the patient or under circumstances that don't require patient authorization. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Redisclosure without additional patient consent or as permitted by law is prohibited. Unauthorized redisclosure or failure to maintain confidentiality subjects you to application of appropriate sanction. If you have received this correspondence in error, please notify the sender at once and destroy any copies you have made.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
This document may contain information covered under the Privacy Act, 5 USC 552(a), and/or the Health Insurance Portability and Accountability Act (PL 104-191) and its various implementing regulations and must be protected in accordance with those provisions. Healthcare information is personal and sensitive and must be treated accordingly. If this correspondence contains healthcare information it is being provided to you after appropriate authorization from the patient or under circumstances that don't require patient authorization. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Redisclosure without additional patient consent or as permitted by law is prohibited. Unauthorized redisclosure or failure to maintain confidentiality subjects you to application of appropriate sanction. If you have received this correspondence in error, please notify the sender at once and destroy any copies you have made.
freesurfer@nmr.mgh.harvard.edu
-
Douglas N Greve