R: Re: hippo subfield - Freesurfer

22 Mar 2013


      I'm sorry but, what's meaning "ldd kvlApplyTransform"? What's I should do more simply?
Stefano
----Messaggio originale----
Da: koen@nmr.mgh.harvard.edu
Data: 22-mar-2013 18.22
A: stdp82@virgilio.it
Cc: freesurfer@nmr.mgh.harvard.edu
Ogg: Re: [Freesurfer] hippo subfield
Hi Stefano,
Can you do "ldd kvlApplyTransform" and send us the result?
Koen
On 3/22/13, stdp82@virgilio.it <stdp82@virgilio.it Hippocampal Subfields
...
processing Fri Mar 22 16:56:31 CET 2013\n mkdir -p
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults\n
kvlSegmentHippocampalSubfields.sh Diff02 left
/Applications/freesurfer/subjects/subject_prova/Diff02
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults
\nDoing left sidemeshFileName:
/Applications/freesurfer/data/GEMS/CurrentMeshCollection30.gzcompressionLookupTableFileName:
/Applications/freesurfer/data/GEMS/compressionLookupTable_left.txtboundingBoxFileName:
/Applications/freesurfer/data/GEMS/imageDump.mgzsubjectName: Diff02side:
leftinputDirectory:
/Applications/freesurfer/subjects/subject_prova/Diff02outputDirectory:
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResultsdirectory
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02
already existsdirectory
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/left
already existscd
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/leftcp
-f /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/nu.mgz
.cp -f
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/aseg.mgz
.cp -f
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/transforms/talairach.xfm
.cp /Applications/freesurfer/data/GEMS/imageDump.mgz .kvlApplyTransform
imageDump.mgz -0.9991 -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560
0.0255 0.0094 0.9996 -3.1939dyld: Library not loaded:
libITKCommon.3.16.dylib  Referenced from:
/Applications/freesurfer/bin/kvlApplyTransform  Reason: image not
found/Applications/freesurfer/bin/kvlSegmentHippocampalSubfields.sh: line
18: 77530 Trace/BPT trap: 5       kvlApplyTransform imageDump.mgz -0.9991
-0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560 0.0255 0.0094 0.9996
-3.1939failed to do kvlApplyTransform imageDump.mgz
     -0.9991   -0.0328    0.0258  144.0010
-0.0330    0.9994   -0.0086    2.6560                                0.0255
  0.0094    0.9996   -3.1939Darwin iMac-di-Stefano.local 12.3.0 Darwin
Kernel Version 12.3.0: Sun Jan  6 22:37:10 PST 2013;
root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64
recon-all -s Diff02 exited with ERRORS at Fri Mar 22 16:56:31 CET 2013
For more details, see the log file
/Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/scripts/recon-all.logTo
report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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