Check and, if necessary, edit the transform.  Then re-run recon-all including the -no-tal-check option

On 2/2/18 9:14 AM, Dijkshoorn, A.B.C. (Aicha) wrote:

Hello free surfer developers,

I am attempting to compute cortical thickness for anatomical ROIs in neonates, but for some of my subjects I get the following error when I run the auto-recon1 command:

\n talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm \n

ERROR: mpr2mni305 failed, see transforms/talairach_avi.log

Darwin leia.ds.umcutrecht.nl 14.5.0 Darwin Kernel Version 14.5.0: Sun Jun  4 21:40:08 PDT 2017; root:xnu-2782.70.3~1/RELEASE_X86_64 x86_64

recon-all -s N192_con_recon exited with ERRORS at Fri Feb  2 12:32:02 CET 2018

Is there any way I can work around this error?

Kind regards, Aicha Dijkshoorn

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer