Dear FreeSurfers,
I have been using FreeSurfer for editing for the past year now and I have recently come across an issue that I have not seen before in a new dataset. The pial surfaces are missing in the right hemisphere following the first run of Freesurfer (before any edits). There are also some without white matter surfaces. However, not all my subjects have shown this and are just fine. Any suggestions on how i can fix this?
Thanks, Deirdre
Was there an error? Look in the recon-all.log file to see doug
On 6/20/13 10:36 AM, Deirdre O Shea wrote:
Dear FreeSurfers,
I have been using FreeSurfer for editing for the past year now and I have recently come across an issue that I have not seen before in a new dataset. The pial surfaces are missing in the right hemisphere following the first run of Freesurfer (before any edits). There are also some without white matter surfaces. However, not all my subjects have shown this and are just fine. Any suggestions on how i can fix this?
Thanks, Deirdre
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Deirdre
can you send us the recon-all.log, or at least the last 100 lines of it? cheers Bruce
On Thu, 20 Jun 2013, Deirdre O Shea wrote:
Dear FreeSurfers,
I have been using FreeSurfer for editing for the past year now and I have recently come across an issue that I have not seen before in a new dataset. The pial surfaces are missing in the right hemisphere following the first run of Freesurfer (before any edits). There are also some without white matter surfaces. However, not all my subjects have shown this and are just fine. Any suggestions on how i can fix this?
Thanks, Deirdre
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Deirdre O Shea -
Douglas Greve