Hi,
I have a few questions, the answers to which probably all involve running mri_surfcluster with the correct arguments specified.
1) What is the easiest way to obtain peak vertex information from a given cluster?
2) For a given sig.mgh file, is there a command which outputs a list/text file of all clusters present?
3) Is there a way to restrict the clusters displayed in the sig.mgh file to clusters of a given # of vertices or larger?
Thanks in advance for your help!
-Cate
What is the easiest way to obtain peak vertex information from a given cluster?
For a given sig.mgh file, is there a command which outputs a list/text file of all clusters present?
Hi,
The --sum option allows you to provide a name for the textfile it will generate containing information about each cluster. In the text file, each row will have a MaxVert field.
mri_surfcluster ... --src <inputfile>.mgh --sum <sumfilename>.sum
- Is there a way to restrict the clusters displayed in the sig.mgh file to clusters of a given # of vertices or larger?
--minarea area "Minimum surface area (in mm^2) that a set of contiguous vertices must achieve in order to be considered a cluster." https://surfer.nmr.mgh.harvard.edu/fswiki/mri_5fsurfcluster
Yep, all these things are done as part of mri_surfcluster. Have you looked at the --help?
doug
On Fri, 14 Sep 2007, Catherine Alexandra Hartley wrote:
Hi,
I have a few questions, the answers to which probably all involve running mri_surfcluster with the correct arguments specified.
What is the easiest way to obtain peak vertex information from a given cluster?
For a given sig.mgh file, is there a command which outputs a list/text file of all clusters present?
Is there a way to restrict the clusters displayed in the sig.mgh file to clusters of a given # of vertices or larger?
Thanks in advance for your help!
-Cate _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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