Dear all, I read the tutorial http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis and I want to know how to visualize the lh.gender_age.thickness.10.mgh. Thanks. All the best.
2013-12-17
Rujing Zha
You can load is as an overlay in tksurfer or freeview and scroll through the frames
On 12/17/2013 07:21 AM, Rujing Zha wrote:
Dear all, I read the tutorial http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis and I want to know how to visualize the lh.gender_age.thickness.10.mgh. Thanks. All the best. 2013-12-17
/Rujing Zha/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Doug, Thanks Doug. In my server, I cannot visualize the file but seeing the time courese window. I want to know whether there is a limit in graphics card for visualing the inflated data. Thanks. All the best.
2013-12-18
Rujing Zha
发件人：Douglas N Greve greve@nmr.mgh.harvard.edu 发送时间：2013-12-18 00:32 主题：Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc 收件人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送：
You can load is as an overlay in tksurfer or freeview and scroll through the frames
On 12/17/2013 07:21 AM, Rujing Zha wrote:
Dear all, I read the tutorial http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis and I want to know how to visualize the lh.gender_age.thickness.10.mgh. Thanks. All the best. 2013-12-17
/Rujing Zha/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
I don't know what you mean. Can you elaborate? doug
On 12/17/2013 10:12 PM, Rujing Zha wrote:
Dear Doug, Thanks Doug. In my server, I cannot visualize the file but seeing the time courese window. I want to know whether there is a limit in graphics card for visualing the inflated data. Thanks. All the best. 2013-12-18
/Rujing Zha/
*发件人：*Douglas N Greve greve@nmr.mgh.harvard.edu *发送时间：*2013-12-18 00:32 *主题：*Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：* You can load is as an overlay in tksurfer or freeview and scroll through the frames On 12/17/2013 07:21 AM, Rujing Zha wrote:
Dear all, I read the tutorial http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis and I want to know how to visualize the lh.gender_age.thickness.10.mgh. Thanks. All the best. 2013-12-17
/Rujing Zha/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
Hi Doug, Doug, thanks for your attention. When I type the command as described detaily in picture 3 in the attachment which is similar to " freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/sig.mgh:overlay_threshold=2,5 ". It represented picture 1 at the beginning and then picture 2 was represented. Picture 1 and 2 also can be got in the attachment. Then I want to click "Show outline only", but I cannot find the module in freeview. And I had no idea about "Once the aparc parcellation appears on the inflated surface". Thanks. All the best.
2013-12-19
Rujing Zha
发件人：Douglas N Greve greve@nmr.mgh.harvard.edu 发送时间：2013-12-19 04:38 主题：Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu
I don't know what you mean. Can you elaborate? doug
On 12/17/2013 10:12 PM, Rujing Zha wrote:
Dear Doug, Thanks Doug. In my server, I cannot visualize the file but seeing the time courese window. I want to know whether there is a limit in graphics card for visualing the inflated data. Thanks. All the best. 2013-12-18
/Rujing Zha/
*发件人：*Douglas N Greve greve@nmr.mgh.harvard.edu *发送时间：*2013-12-18 00:32 *主题：*Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：* You can load is as an overlay in tksurfer or freeview and scroll through the frames On 12/17/2013 07:21 AM, Rujing Zha wrote:
Dear all, I read the tutorial http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis and I want to know how to visualize the lh.gender_age.thickness.10.mgh. Thanks. All the best. 2013-12-17
/Rujing Zha/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug, I just found the module. All the best.
2013-12-19
Rujing Zha
发件人："Rujing Zha"charujing123@163.com 发送时间：2013-12-19 15:02 主题：Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc 收件人："Douglas N Greve"greve@nmr.mgh.harvard.edu 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu
Hi Doug, Doug, thanks for your attention. When I type the command as described detaily in picture 3 in the attachment which is similar to " freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/sig.mgh:overlay_threshold=2,5 ". It represented picture 1 at the beginning and then picture 2 was represented. Picture 1 and 2 also can be got in the attachment. Then I want to click "Show outline only", but I cannot find the module in freeview. And I had no idea about "Once the aparc parcellation appears on the inflated surface". Thanks. All the best.
2013-12-19
Rujing Zha
发件人：Douglas N Greve greve@nmr.mgh.harvard.edu 发送时间：2013-12-19 04:38 主题：Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu
I don't know what you mean. Can you elaborate? doug
On 12/17/2013 10:12 PM, Rujing Zha wrote:
Dear Doug, Thanks Doug. In my server, I cannot visualize the file but seeing the time courese window. I want to know whether there is a limit in graphics card for visualing the inflated data. Thanks. All the best. 2013-12-18
/Rujing Zha/
*发件人：*Douglas N Greve greve@nmr.mgh.harvard.edu *发送时间：*2013-12-18 00:32 *主题：*Re: [Freesurfer] visualizing lh.gender_age.thickness.10.mgh after mris_preproc *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：* You can load is as an overlay in tksurfer or freeview and scroll through the frames On 12/17/2013 07:21 AM, Rujing Zha wrote:
Dear all, I read the tutorial http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis and I want to know how to visualize the lh.gender_age.thickness.10.mgh. Thanks. All the best. 2013-12-17
/Rujing Zha/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Rujing Zha