recon-all exited with ERRORS - Freesurfer

29 Nov 2010


      Dear expert，        We compute the MRI data with FREESURFER using  instruction recon-all -s < > -all,but some data will  show  recon -all exited with ERRORS  in the recon-all-status.log. The flowing display error information :status file for recon-allThu Nov 11 19:22:13 HKT 2010recon-all finished without error at Thu Nov 11 19:22:17 HKT 2010
New invocation of recon-all
status file for recon-allThu Nov 11 20:26:17 HKT 2010#@# MotionCor Thu Nov 11 20:26:17 HKT 2010#@# Nu Intensity Correction Thu Nov 11 20:26:33 HKT 2010#@# Talairach Thu Nov 11 20:26:57 HKT 2010#@# Talairach Failure Detection Thu Nov 11 20:27:50 HKT 2010#@# Intensity Normalization Thu Nov 11 20:27:50 HKT 2010#@# Skull Stripping Thu Nov 11 20:31:17 HKT 2010Linux ccm.web 2.6.18-194.17.1.el5xen #1 SMP Wed Sep 29 13:30:21 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Thu Nov 11 23:17:40 HKT 2010
OR   
LIKE THIS:  
status file for recon-allThu Nov 11 19:33:11 HKT 2010recon-all finished without error at Thu Nov 11 19:33:15 HKT 2010
New invocation of recon-all
status file for recon-allMon Nov 22 00:51:21 HKT 2010#@# MotionCor Mon Nov 22 00:51:21 HKT 2010#@# Nu Intensity Correction Mon Nov 22 00:51:37 HKT 2010#@# Talairach Mon Nov 22 00:52:34 HKT 2010#@# Talairach Failure Detection Mon Nov 22 00:53:20 HKT 2010#@# Intensity Normalization Mon Nov 22 00:53:20 HKT 2010#@# Skull Stripping Mon Nov 22 00:56:37 HKT 2010#@# EM Registration Mon Nov 22 02:36:07 HKT 2010#@# CA Normalize Mon Nov 22 03:17:48 HKT 2010#@# CA Reg Mon Nov 22 03:20:05 HKT 2010#@# CA Reg Inv Mon Nov 22 07:03:03 HKT 2010#@# Remove Neck Mon Nov 22 07:04:31 HKT 2010#@# SkullLTA Mon Nov 22 07:06:08 HKT 2010#@# SubCort Seg Mon Nov 22 08:12:28 HKT 2010Linux ccm.web 2.6.18-194.17.1.el5xen #1 SMP Wed Sep 29 13:30:21 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Nov 22 08:35:10 HKT 2010
Could you explain to me the reason for the problem and could you solve me the problem? I will appreciate your help very much. Best regards, Liang Gao