Hi Folks,
I would like to visually check the cortical parcellation for a large number of patients (>200) using tksurfer. Is there a script to which I could submit a list of subject id's and get it to launch tksurfer and display the parcellation data for each subject sequentially ?
Thanks Mehul
How about:
setenv SUBJECTS " id1 id2 id3 .. "
foreach s ($SUBJECTS) # do stuff echo $s tksurfer $s .... end
(this is for cshell)
Cheers, Martin
On Tue, 2009-11-24 at 17:19 -0800, Mehul Sampat wrote:
Hi Folks,
I would like to visually check the cortical parcellation for a large number of patients (>200) using tksurfer. Is there a script to which I could submit a list of subject id's and get it to launch tksurfer and display the parcellation data for each subject sequentially ?
Thanks Mehul
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
you can also write a tcl script to save snapshots to a file and invoke it with -tcl <script name>
the script would look something like
set fname snapshot.$subject.tif save_tiff $fname exit
cheers, Bruce
On Wed, 25 Nov 2009, Martin Reuter wrote:
How about:
setenv SUBJECTS " id1 id2 id3 .. "
foreach s ($SUBJECTS) # do stuff echo $s tksurfer $s .... end
(this is for cshell)
Cheers, Martin
On Tue, 2009-11-24 at 17:19 -0800, Mehul Sampat wrote:
Hi Folks,
I would like to visually check the cortical parcellation for a large number of patients (>200) using tksurfer. Is there a script to which I could submit a list of subject id's and get it to launch tksurfer and display the parcellation data for each subject sequentially ?
Thanks Mehul
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Freesurfers,
Where can I find documentation and labels for Destrieux Atlas? How can I download this new atlas? My stats folders for each subject has aparc.a2005s.stats. Can I generate the stats for the new atlas?
Sincerely, Manish Dalwani Sr. PRA Univ. of CO
freesurfer@nmr.mgh.harvard.edu