Hello, i was wondering if you could possibly help me with a subjects file that has loaded badly. It not only loaded up-side down but looks as though there are additional deficits that need correcting. Any tips or advice would be greatly appreciated!
Kind regard, Michael
Hi Michael
if it loaeds in freeview upside down then everything else will fail. What format did it start as? Best to use dicoms directly if you can, and avoid analyze. In any case, make sure that the directions are correct at the beginning (that is, for the file that you give to recon-all as the input).
cheers Bruce
On Mon, 3 Jul 2017, Michael Davies wrote:
Hello, i was wondering if you could possibly help me with a subjects file that has loaded badly. It not only loaded up-side down but looks as though there are additional deficits that need correcting. Any tips or advice would be greatly appreciated!
Kind regard, Michael
Hi Bruce, i used a T1.nii file at the beginning and performed the standard recon-all to convert the file just like i did with the rest of them. I deleted the file and run it again but it still produced the same results using this method.
Kind regards, Michael
On 3 Jul 2017, at 15:05, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Michael
if it loaeds in freeview upside down then everything else will fail. What format did it start as? Best to use dicoms directly if you can, and avoid analyze. In any case, make sure that the directions are correct at the beginning (that is, for the file that you give to recon-all as the input).
cheers Bruce
On Mon, 3 Jul 2017, Michael Davies wrote:
Hello, i was wondering if you could possibly help me with a subjects file that has loaded badly. It not only loaded up-side down but looks as though there are additional deficits that need correcting. Any tips or advice would be greatly appreciated!
Kind regard, Michael
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Michael
where did you the T1.nii file come from? Do you have the dicoms that were used to create it? It will indeed continue to fail until you fix the file so that the anatomical directions are correct (which you can verify by viewing it in freeview)
cheers Bruce
On Mon, 3 Jul 2017, Michael Davies wrote:
Hi Bruce, i used a T1.nii file at the beginning and performed the standard recon-all to convert the file just like i did with the rest of them. I deleted the file and run it again but it still produced the same results using this method.
Kind regards, Michael
On 3 Jul 2017, at 15:05, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Michael
if it loaeds in freeview upside down then everything else will fail. What format did it start as? Best to use dicoms directly if you can, and avoid analyze. In any case, make sure that the directions are correct at the beginning (that is, for the file that you give to recon-all as the input).
cheers Bruce
On Mon, 3 Jul 2017, Michael Davies wrote:
Hello, i was wondering if you could possibly help me with a subjects file that has loaded badly. It not only loaded up-side down but looks as though there are additional deficits that need correcting. Any tips or advice would be greatly appreciated!
Kind regard, Michael
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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