Thanks, I tried mri_extract_label and it works fine. However, it extracts the structure and gives it the label "nerve". Is there any way within mri_extract_label to keep the original labels (i.e. left putamen, right putamen, or whatever)? Jared
I don't know about extract_label, but you can set the output value in mri_binarize
Jared Price wrote:
Thanks, I tried mri_extract_label and it works fine. However, it extracts the structure and gives it the label "nerve". Is there any way within mri_extract_label to keep the original labels (i.e. left putamen, right putamen, or whatever)? Jared
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not trivially, although it would be easy to do the replacement in matlab. It's because it binarizes the labels to 128 (which is Nerve in our LUT) On Mon, 16 Nov 2009, Jared Price wrote:
Thanks, I tried mri_extract_label and it works fine. However, it extracts the structure and gives it the label "nerve". Is there any way within mri_extract_label to keep the original labels (i.e. left putamen, right putamen, or whatever)? Jared
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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