This command calls mri_segstats with the partial volume correction.

doug

On Fri, 28 Oct 2005, Fornito, Alexander wrote:

Hi Jenni, Does this command provide the partial-volume corrected volumes, or do you need to use mri_seg_stats for that? Thanks, Alex

Alex Fornito M.Psych/PhD (clin. neuro.) candidate Melbourne Neuropsychiatry Centre and Department of Psychology The University of Melbourne alexander.fornito@wh.org.au

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Jenni Pacheco Sent: Fri 28/10/2005 8:34 AM To: antao@itsa.ucsf.edu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] aseg

You can run recon-all -segstats -subjid <subjid> and it will output a stats file into your subject's scripts/ directory. If you've already run recon-all you may already have this file.

antao@itsa.ucsf.edu wrote:

...

Hi How to calculate the volume of segmented brain like hippocampus, subcortical nucleus?

Thanks,

Antao

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