Hello all,
I have run mri_convert on a series of dicoms and received the following error for several of my images. As with the previous bug report for this I have run mri_info on my dicom series and it’s output is below. My main concern is since these dicoms are being jumbled up and I am not sure what that warning means. Is it the dicom header it is comparing? Can you elaborate or put me on track to debug this error?
Thanks,
Olivia
mri_info is below:
mri_info 500/Image_SLC0_CON0_PHS0_REP1_SET0_AVE0_2.dcm Getting Series No Scanning Directory INFO: Found 9218 files in 500 INFO: Scanning for Series Number 3076 INFO: found 4608 files in series INFO: loading series header info.
INFO: sorting. WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP13_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP25_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP37_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP49_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP4_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP61_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP73_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP85_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP20_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP32_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP56_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP44_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP68_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP80_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP0_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP10_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP92_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP22_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP46_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP58_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP82_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP94_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP70_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP34_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP106_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP8_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP104_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP8_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP15_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP27_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP39_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP51_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP75_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP63_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP87_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP17_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP29_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP53_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP41_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP65_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP89_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP77_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP19_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP43_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP67_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP55_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP79_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP91_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP31_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP21_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP33_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP45_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP57_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP69_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP93_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP0_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP11_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP81_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP23_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP0_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP9_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP47_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP35_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP71_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP83_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP95_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP59_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP24_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP48_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP4_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP60_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP72_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP8_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP96_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP84_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP36_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP12_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP14_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP26_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP38_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP50_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP74_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP62_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP86_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP8_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP98_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP16_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP28_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP52_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP40_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP64_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP88_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP76_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP18_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP30_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP42_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP66_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP54_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP78_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP90_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP102_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP8_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP100_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP8_SET0_AVE0_2.dcm RunNo = 3075
WARNING: file 500/Image_SLC6_CON0_PHS0_REP0_SET0_AVE0_2.dcm does not contain a Siemens ASCII header has this file been anonymized? Proceeding as best as I can ...
INFO: (380 380 12), nframes = 384, ismosaic=0 PE Dir ROW ROW Volume information for 500/Image_SLC0_CON0_PHS0_REP1_SET0_AVE0_2.dcm type: siemens_dicom dimensions: 380 x 380 x 12 x 384 voxel sizes: 0.5053, 0.5053, 0.5000 type: SHORT (4) fov: 380.000 dof: 0 xstart: -190.0, xend: 190.0 ystart: -190.0, yend: 190.0 zstart: -6.0, zend: 6.0 TR: 1250.00 msec, TE: 24.60 msec, TI: 2500.00 msec, flip angle: 40.00 degrees nframes: 384 PhEncDir: ROW ras xform present xform info: x_r = 1.0000, y_r = -0.0000, z_r = 0.0000, c_r = -0.0000 : x_a = -0.0000, y_a = -0.7593, z_a = -0.6508, c_a = -41.5207 : x_s = 0.0000, y_s = -0.6508, z_s = 0.7593, c_s = -3.6854 Orientation : RPS Primary Slice Direction: axial
voxel to ras transform: 0.5053 -0.0000 0.0000 -96.0000 -0.0000 -0.3836 -0.3254 33.3216 0.0000 -0.3288 0.3796 56.5112 0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -0.127645
ras to voxel transform: 1.9792 -0.0000 -0.0000 190.0001 0.0000 -1.5027 -1.2880 122.8593 -0.0000 -1.3015 1.5185 -42.4449 0.0000 0.0000 0.0000 1.0000
When FS reads a series of dicom files, it tries to sort them in time and space so that it can generate the appropriate 4D volume. To do this, it needs to get info out of the DICOM header to determine this sorting. This includes image number and geometry information. If that information is not recorded properly (eg, if all files have the same info), then it cannot be sorted and thus the warnings below. It looks like the dicoms do not contain the siemens ascii header, which could also be a source of the warning. If the images look ok, then it might not be anything to worry about.
On 07/12/2016 01:19 PM, Olivia Walton Stanley wrote:
Hello all,
I have run mri_convert on a series of dicoms and received the following error for several of my images. As with the previous bug report for this I have run mri_info on my dicom series and it’s output is below. My main concern is since these dicoms are being jumbled up and I am not sure what that warning means. Is it the dicom header it is comparing? Can you elaborate or put me on track to debug this error?
Thanks,
Olivia
mri_info is below:
mri_info 500/Image_SLC0_CON0_PHS0_REP1_SET0_AVE0_2.dcm Getting Series No Scanning Directory INFO: Found 9218 files in 500 INFO: Scanning for Series Number 3076 INFO: found 4608 files in series INFO: loading series header info.
INFO: sorting. WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP13_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP25_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP37_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP49_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP4_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP61_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP73_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC0_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC0_CON0_PHS0_REP85_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP20_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP32_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP56_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP44_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP68_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP80_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP0_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP10_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP92_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP22_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP46_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP58_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP82_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP94_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP70_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP34_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC11_CON0_PHS0_REP106_SET0_AVE0_2.dcm File2: 500/Image_SLC11_CON0_PHS0_REP8_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC10_CON0_PHS0_REP104_SET0_AVE0_2.dcm File2: 500/Image_SLC10_CON0_PHS0_REP8_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP15_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP27_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP39_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP51_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP75_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP63_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC1_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC1_CON0_PHS0_REP87_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP17_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP29_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP53_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP41_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP65_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP89_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC2_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC2_CON0_PHS0_REP77_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP19_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP43_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP67_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP55_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP79_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP91_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC3_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC3_CON0_PHS0_REP31_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP21_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP33_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP45_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP57_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP69_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP93_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP0_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP11_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP81_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP1_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP23_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC4_CON0_PHS0_REP0_SET0_AVE0_2.dcm File2: 500/Image_SLC4_CON0_PHS0_REP9_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP47_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP35_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP71_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP83_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP95_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC5_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC5_CON0_PHS0_REP59_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP24_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP48_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP4_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP60_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP72_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP8_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP96_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP84_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP36_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC6_CON0_PHS0_REP12_SET0_AVE0_2.dcm File2: 500/Image_SLC6_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP14_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP26_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP38_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP3_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP50_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP74_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP62_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP86_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC7_CON0_PHS0_REP8_SET0_AVE0_2.dcm File2: 500/Image_SLC7_CON0_PHS0_REP98_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP16_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP28_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP2_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP52_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP40_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP64_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP88_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP76_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP18_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP1_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP2_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP30_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP3_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP42_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP5_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP66_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP4_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP54_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP6_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP78_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP7_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP90_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC9_CON0_PHS0_REP102_SET0_AVE0_2.dcm File2: 500/Image_SLC9_CON0_PHS0_REP8_SET0_AVE0_2.dcm WARNING: files are not found to be different and cannot be sorted File1: 500/Image_SLC8_CON0_PHS0_REP100_SET0_AVE0_2.dcm File2: 500/Image_SLC8_CON0_PHS0_REP8_SET0_AVE0_2.dcm RunNo = 3075
WARNING: file 500/Image_SLC6_CON0_PHS0_REP0_SET0_AVE0_2.dcm does not contain a Siemens ASCII header has this file been anonymized? Proceeding as best as I can ...
INFO: (380 380 12), nframes = 384, ismosaic=0 PE Dir ROW ROW Volume information for 500/Image_SLC0_CON0_PHS0_REP1_SET0_AVE0_2.dcm type: siemens_dicom dimensions: 380 x 380 x 12 x 384 voxel sizes: 0.5053, 0.5053, 0.5000 type: SHORT (4) fov: 380.000 dof: 0 xstart: -190.0, xend: 190.0 ystart: -190.0, yend: 190.0 zstart: -6.0, zend: 6.0 TR: 1250.00 msec, TE: 24.60 msec, TI: 2500.00 msec, flip angle: 40.00 degrees nframes: 384 PhEncDir: ROW ras xform present xform info: x_r = 1.0000, y_r = -0.0000, z_r = 0.0000, c_r = -0.0000 : x_a = -0.0000, y_a = -0.7593, z_a = -0.6508, c_a = -41.5207 : x_s = 0.0000, y_s = -0.6508, z_s = 0.7593, c_s = -3.6854 Orientation : RPS Primary Slice Direction: axial
voxel to ras transform: 0.5053 -0.0000 0.0000 -96.0000 -0.0000 -0.3836 -0.3254 33.3216 0.0000 -0.3288 0.3796 56.5112 0.0000 0.0000 0.0000 1.0000
voxel-to-ras determinant -0.127645
ras to voxel transform: 1.9792 -0.0000 -0.0000 190.0001 0.0000 -1.5027 -1.2880 122.8593 -0.0000 -1.3015 1.5185 -42.4449 0.0000 0.0000 0.0000 1.0000
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freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Olivia Walton Stanley