Re: [Freesurfer] question about 'mris_wm_volume: errorwhileloading shared libraries: libstdc++.so.6' - Freesurfer

14 May 2007


      Dear Nick
Thanks a lot. Here is the output of ' ldd `which mris_wm_volume`
linux-gate.so.1 =>  (0xffffe000)
        libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x40019000)
        libtiff.so.3 => /usr/lib/libtiff.so.3 (0x40038000)
        libz.so.1 => /lib/libz.so.1 (0x40088000)
        libcrypt.so.1 => /lib/libcrypt.so.1 (0x40099000)
        libstdc++.so.6 => not found
        libm.so.6 => /lib/tls/libm.so.6 (0x400eb000)
        libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x4010e000)
        libc.so.6 => /lib/tls/libc.so.6 (0x40116000)
        libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x4022f000)
        /lib/ld-linux.so.2 (0x40000000)
Any suggestions please?
Rhuang
On Monday 14 May 2007 17:53, Nick Schmansky wrote:
...
Ruiwang,
It looks like you are already running what I thought would be the
correct version (rh9 is redhat 9).  Can you send me the output of this
command?
ldd `which mris_wm_volume`
Nick
On Mon, 2007-05-14 at 17:43 +0200, Ruiwang Huang wrote:
...
Dear Nick
Many thanks for your message.
Here is the output after my typing
...
...
cat $FREESURFER_HOME/build-stamp.txt
freesurfer-Linux-rh9-stable-pub-v3.0.3
Do I need update the freesurfer on my PC?
Ruiwang
On Monday 14 May 2007 17:26, you wrote:
...
Rhuang,
I'm guessing that you're using our Centos freesurfer distribution
(type: cat $FREESURFER_HOME/build-stamp.txt   to find out).  You'll
want to use our RedHat 9 freesurfer distribution with Suse9.3.
Nick
On Mon, 2007-05-14 at 17:05 +0200, Ruiwang Huang wrote:
...
Dear All
I meet a problem when I run the command
  mris_wm_volume
to calculate the white matter volume for each hemisphere.
The error message is coplied here
...
...
mris_wm_volume
mris_wm_volume: error while loading shared libraries:
libstdc++.so.6:
cannot open shared object file: No such file or directory
Does any one know how to solve the problem? (My PC installed Suse9.3)
Many thanks in advance
Rhuang

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