Using QDec, I've created an ROI label (lh.G_cuneus.label) and a .stats file (lh.G_cuneus.stats) that corresponds to this ROI for each participant in my group. Is there a quick way to compile cortical thickness data for this ROI from all participants? The manual suggests using aparcstats2table but I'm not sure how to select the stats for just this one ROI. Any help would be appreciated!
Hi Krista
If the directory tree is something like
$SUBJECTS_DIR | |------------ P01 | |-- stats | | |---- lh.G_cuneus.stats |------------ P02 | |-- stats | | |---- lh.G_cuneus.stats
where P0? are the participants subjects directories.. Use aparcstats2table like this
aparcstats2table --subjects P01 P02 --hemi lh --parc G_cuneus -- measure thickness --tablefile out.table
-Krish
On May 2, 2011, at 10:19 AM, Krista Kelly wrote:
Using QDec, I've created an ROI label (lh.G_cuneus.label) and a .stats file (lh.G_cuneus.stats) that corresponds to this ROI for each participant in my group. Is there a quick way to compile cortical thickness data for this ROI from all participants? The manual suggests using aparcstats2table but I'm not sure how to select the stats for just this one ROI. Any help would be appreciated! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Krish Subramaniam -
Krista Kelly