Dear all, I have run recon-all for some subjects,but this code is unexpected terminated before it normally end. Can I run the code agian directly without deleting some outputs obtained from recon-all? That is to say, part of recon-all outputs do exist(as I have run recon-all previously), then recon-all new output will overwrite the existing files when I run recon-all again? All the best.
2013-11-21
Rujing Zha
Hi Rujing
run:
recon-all -s <subject> -make all
that will figure out what needs to be rerun and do so.
cheers Bruce On Thu, 21 Nov 2013, Rujing Zha wrote:
Dear all, I have run recon-all for some subjects,but this code is unexpected terminated before it normally end. Can I run the code agian directly without deleting some outputs obtained from recon-all? That is to say, part of recon-all outputs do exist(as I have run recon-all previously), then recon-all new output will overwrite the existing files when I run recon-all again? All the best. 2013-11-21
Rujing Zha
Dear professor Bruce, Thanks for your precious prompt. I will try it. All the best. Rujing Zha
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-11-21 21:39 主题：Re: [Freesurfer] recon-all -s subjects -all unexpected termination 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu
Hi Rujing
run:
recon-all -s <subject> -make all
that will figure out what needs to be rerun and do so.
cheers Bruce On Thu, 21 Nov 2013, Rujing Zha wrote:
Dear all, I have run recon-all for some subjects,but this code is unexpected terminated before it normally end. Can I run the code agian directly without deleting some outputs obtained from recon-all? That is to say, part of recon-all outputs do exist(as I have run recon-all previously), then recon-all new output will overwrite the existing files when I run recon-all again? All the best.
2013-11-21
Rujing Zha
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Dear all, As we know, recon-all is a integrated code. I have read this code process flow in the website http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable. Can I run the a series of command which are presented in command line step by step to realize all the function of recon-all? All the best.
2013-11-21
Rujing Zha
发件人："Rujing Zha"charujing123@163.com 发送时间：2013-11-21 22:30 主题：Re: [Freesurfer] recon-all -s subjects -all unexpected termination 收件人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送：
Dear professor Bruce, Thanks for your precious prompt. I will try it. All the best. Rujing Zha
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-11-21 21:39 主题：Re: [Freesurfer] recon-all -s subjects -all unexpected termination 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu
Hi Rujing
run:
recon-all -s <subject> -make all
that will figure out what needs to be rerun and do so.
cheers Bruce On Thu, 21 Nov 2013, Rujing Zha wrote:
Dear all, I have run recon-all for some subjects,but this code is unexpected terminated before it normally end. Can I run the code agian directly without deleting some outputs obtained from recon-all? That is to say, part of recon-all outputs do exist(as I have run recon-all previously), then recon-all new output will overwrite the existing files when I run recon-all again? All the best.
2013-11-21
Rujing Zha
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Rujing
sure, you can run them individually if you want. Just make sure it is in the right order and you don't skip any or they will fail
cheers Bruce On Thu, 21 Nov 2013, Rujing Zha wrote:
Dear all, As we know, recon-all is a integrated code. I have read this code process flow in the website http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable. Can I run the a series of command which are presented in command line step by step to realize all the function of recon-all? All the best. 2013-11-21
Rujing Zha
????"Rujing Zha"charujing123@163.com ?????2013-11-21 22:30 ???Re:[Freesurfer] recon-all -s subjects -all unexpected termination ????"freesurfer"freesurfer@nmr.mgh.harvard.edu ??? Dear professor Bruce, Thanks for your precious prompt. I will try it. All the best. Rujing Zha
????Bruce Fischl fischl@nmr.mgh.harvard.edu ?????2013-11-21 21:39 ???Re:[Freesurfer] recon-all -s subjects -all unexpected termination ????"Rujing Zha"charujing123@163.com ???"freesurfer"freesurfer@nmr.mgh.harvard.edu Hi Rujing run: recon-all -s <subject> -make all that will figure out what needs to be rerun and do so. cheers Bruce On Thu, 21 Nov 2013, Rujing Zha wrote:
Dear all, I have run recon-all for some subjects,but this code is unexpected terminated before it normally end. Can I run the code agian directly with
out
deleting some outputs obtained from recon-all? That is to say, part of recon-all outputs do exist(as I have run recon-all previously), then recon-all new output will overwrite the existing files when I run recon-a
ll
again? All the best. 2013-11-21 _________________________________________________________________________
___
Rujing Zha
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer%C2%A0 The information in this e-mail is intended only for the person to whom it i s addressed. If you believe this e-mail was sent to you in error and the e-ma il contains patient information, please contact the Partners Compliance HelpLi ne at http://www.partners.org/complianceline%C2%A0.%C2%A0If%C2%A0the%C2%A0e-mail%C... rror but does not contain patient information, please contact the sender and pro perly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Rujing Zha