-rwxrwxr-x 1 rd521 rd521 4951 Oct 30 04:45 /usr/local/freesurfer/dev/bin/slicedelay

Thanks!

From: Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu Sent: Friday, October 30, 2020 10:38 AM To: Peled, Noam NPELED@mgh.harvard.edu; Freesurfer support list freesurfer@nmr.mgh.harvard.edu Cc: Gumenyuk, Valentina VGUMENYUK@mgh.harvard.edu; Stufflebeam, Steven M. SMSTUFFLEBEAM@mgh.harvard.edu; Douglas N Greve greve@nmr.mgh.harvard.edu Subject: Re: preproc-sess error with FreeSurfer 7.1

can you send the result of ls -l `which slicedelay`

On 10/29/2020 8:47 PM, Peled, Noam wrote: Dear FreeSurfer experts! We are running FsFast pipeline to analysis our language task for epilepsy patients. Usually we are using FreeSurfer 5.3. We want to use a newer version, so I decided to jump right to 7.1 (dev) When trying to run preproc-sess -surface {trg_subject} lhrh -s {subject} -fwhm {fwhm} -fsd {fsd} -mni305 -per-run -stc siemens I got the following error:

mri_info --nslices --o /autofs/space/megraid_clinical/MEG-MRI/seder/freesurfer/nmr01415/sycabs/005/tmp.110620/nslices.dat /autofs/space/megraid_clinical/MEG-MRI/seder/freesurfer/nmr01415/sycabs/005/fmcpr.nii.gz nslices = 44 slicedelay --nslices 44 --siemens --o /autofs/space/megraid_clinical/MEG-MRI/seder/freesurfer/nmr01415/sycabs/005/tmp.110620/sdf.txt --ngroups 1 File "/usr/local/freesurfer/dev/bin/slicedelay", line 9 print "USAGE: slicedelay --help"; ^ SyntaxError: Missing parentheses in call to 'print'

When I reran the same pipeline with FreeSurfer 5.3, it seems to work. Is it a bug in 7.1? Or should we change something in the call?

Thanks, Noam