External Email - Use Caution

I noticed the error and I fixed.

Thank you, Rosie

On Fri, Jun 25, 2021 at 8:45 PM Rosalia Dacosta Aguayo rdacostaa@gmail.com wrote:

Dear Freesurfer team,

Sorry for posting this question but I have been trying different things and nothing seems to work.

rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ recon-all -s sub-001_ses-BSL -i sub-001_ses-BSL_T1w.nii -T2 sub-001_ses-BSL_T2w.nii -T2pial -all *ERROR: cannot find sub-001_ses-BSL_T1w.nii* Linux rosalia-Lenovo-Y520-15IKBN 4.10.0-40-generic #44~16.04.1-Ubuntu SMP Thu Nov 9 15:37:44 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s sub-001_ses-BSL exited with ERRORS at Fri 25 Jun 20:41:02 CEST 2021

For more details, see the log file To report a problem, see http://secure-web.cisco.com/1S_tXX46F6eCH3NCIgrT8aFSHQtE5iRVch4TzSHJ1rabFMPf...

rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd ARTICO rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ ls sub-001_ses-BSL sub-003_ses-BSL sub-005_ses-BSL sub-002_ses-BSL sub-004_ses-BSL sub-006_ses-BSL rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ cd sub-001_ses-BSL/ rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO/sub-001_ses-BSL $ ls sub-001_ses-BSL_T1w.nii sub-001_ses-BSL_T2w.nii rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO/sub-001_ses-BSL $

If I trying to run recon-all inside the subject folder it tells me that this subject has already been run and if that it is a new subject, I should change the name of the folder and the files. I do it, and it keeps giving me the same error.

I am out of ideas...