Hi,
I’m looking to do some DTI analysis with dt_recon. I have Philips acquired DTI images in par/rec. I ran dcm2nii and have retrieved the associated *bval, *bvec and *nii.gz files that come out.
In the tutorial it mentions the -i flag requiring a dcm image. Is it possible to pass a *.nii.gz file ?
Regards,
_______________________________________ Bryan Chiu Research Assistant Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health Department of Physical Therapy Faculty of Medicine University of British Columbia
Hi Bryan - It'll convert whatever input you give it to nifti, so it's fine if your input is already nifti.
Best, a.y
On Wed, 6 Apr 2016, Chiu, Bryan (PHTH) wrote:
Hi,
I’m looking to do some DTI analysis with dt_recon. I have Philips acquired DTI images in par/rec. I ran dcm2nii and have retrieved the associated *bval, *bvec and *nii.gz files that come out.
In the tutorial it mentions the -i flag requiring a dcm image. Is it possible to pass a *.nii.gz file ?
Regards,
Bryan Chiu Research Assistant Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health Department of Physical Therapy Faculty of Medicine University of British Columbia
freesurfer@nmr.mgh.harvard.edu