Hi all, I am running in stable3 trying to finish up an old analysis. I think the problem I am running into arises because I have 2 separate analyses that are identical except for the paradigm files used but I am looking for verification. One analysis uses paradigm files that define only 3 conditions and the other defines 5 conditions (the original 3 plus 2 more). When I run func2roi-sess on each analysis, and compare the results I obtain using roisummary-sess for the 3 conditions that overlap between the 2 analyses they are very different. I guess the root of my question is: how are the condition values calculated? Are they calculated as offsets from averages of everything that isn't defined as a condition? Would this be why the condition values are different for 2 analyses using different paradigm files with overlapping conditions? I attached two roi summaries for comparison. Thanks in advance! Cameron
freesurfer@nmr.mgh.harvard.edu