External Email - Use Caution
Hi Freesurfer folks!
I am attempting to build freesurfer from source for our HPC center here at Brown University, but are running into a snag. Looks like the documentation points to a dead link for Step 3 of the freesurfer_linux_developers_page https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page where we are required to get the prebuilt bundle of 3rd party dependancies using:
wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz
However, the command fails as the directory does not exist.
$ wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz
--2018-12-21 11:07:49-- ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz
=> ‘centos6-x86_64-packages.tar.gz’
Resolving surfer.nmr.mgh.harvard.edu (surfer.nmr.mgh.harvard.edu)... 132.183.240.105
Connecting to surfer.nmr.mgh.harvard.edu (surfer.nmr.mgh.harvard.edu)|132.183.240.105|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /pub/dist/fs_supportlibs/prebuilt/centos6_x86_64 ...
No such directory ‘pub/dist/fs_supportlibs/prebuilt/centos6_x86_64’.
Any chance I could get the updated path for these dependencies? Happy holidays!
Cheers, Max
External Email - Use Caution
Please see this recent email from the list archives, I think it is what you are looking for:
Tim
Hello Joseph,
Try this link for the 3rd party libs (to use with the cmake build)
http://surfer.nmr.mgh.harvard.edu/pub/data/fspackages/prebuilt/
- rob
On Sep 20, 2018, at 8:39 PM, Moon,> wrote:
External Email - Use CautionHi,
I’m trying to build Freesurfer according to the instructions athttp://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page
However, the FTP link to prebuilt 3rd party libraries seems to be down. The directory “ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt” is no longer being hosted.
Please let me know if I misunderstood something!
On December 21, 2018 at 5:23 PM "King, Maximilian" maximilian_king@brown.edu wrote:
External Email - Use CautionHi Freesurfer folks!
I am attempting to build freesurfer from source for our HPC center here at Brown University, but are running into a snag. Looks like the documentation points to a dead link for Step 3 of the freesurfer_linux_developers_page https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page where we are required to get the prebuilt bundle of 3rd party dependancies using:
wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz
However, the command fails as the directory does not exist.
$ wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz
--2018-12-21 11:07:49-- ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz
=> ‘centos6-x86_64-packages.tar.gz’Resolving surfer.nmr.mgh.harvard.edu (surfer.nmr.mgh.harvard.edu)... 132.183.240.105
Connecting to surfer.nmr.mgh.harvard.edu (surfer.nmr.mgh.harvard.edu)|132.183.240.105|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /pub/dist/fs_supportlibs/prebuilt/centos6_x86_64 ...
No such directory ‘pub/dist/fs_supportlibs/prebuilt/centos6_x86_64’.
Any chance I could get the updated path for these dependencies? Happy holidays!
Cheers, Max
--
*Maximilian King, MSc* HPC Application Scientist Center for Computation and Visualization
Brown University Computing and Information Systems 180 George St, Providence, RI 02906, USA Tel: +1 (401) 863-7448 *maximilian_king@brown.edu* maximilian_king@brown.edu *http://ccv.brown.edu* http://ccv.brown.edu/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
freesurfer@nmr.mgh.harvard.edu