Bruce,

I have uploaded files via FileDrop, I was not able to use freesurfer@nmr.mgh.harvard.edu as a recipient and I used your email instead. Please let me know if you are able to access the files.

Thank you!

Best, Anna ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Thursday, May 2, 2019 11:26 AM To: Freesurfer support list Subject: Re: [Freesurfer] inaccurate segmentation from recon-all

Hi Anna

can you send us some images of upload a subject so we can see what you mean?

cheers Bruce

On Thu, 2 May 2019, Mun, Anna wrote:

Hi Freesurfer team,

I have a question about segmentation. I am working with scans of patients with Down syndrome and the segmentation (aseg.presurf.mgz and aseg.mgz) for a few subjects is slightly inaccurate. It mostly affects the areas that we are specifically interested in - basal ganglia and thalamus. Is there any alternative way to correct the segmentation other than doing it manually?

Thank you!

Best, Anna