Hi John,

In order to use bbregister you would first need to recon your data set as the registration algorithm relies on surfaces. After that

Usage: bbregister --s <subj> --mov <volid> --reg <regfile> --<contrast> Help: bbregister --help

Lilla

On Sun, 17 Jan 2016, John Anderson wrote:

Dear experts, I wanted to register T1 mprage image to the standard space MNI152. The output of FLIRT at dof 12 is not effective. How can I get better results using bbregister? What are the commands that I need to use ?   thanks for any help! John