Hi Ed

you could just use the ribbon if you want the filled space between the surfaces, but you can't get a nice continuous contour in a voxel volume as by its nature it is discretized

cheers Bruce

On Mon, 14 Apr 2014, Ed Gronenschild wrote:

Hi,

When using tkmedit or freeview, a surface is converted into a contour superimposed onto T1. I would like to do the same using the command:

mri_surf2vol --surf pial --hemi lh --template subjID/mri/T1.mgz \ --identity --o lh.pial.mgz --mkmask

I notice that the "contour" in lh.pial.mgz is not contiguous, a lot of gaps are present. How can I obtain a nice contiguous contour?

Cheers, Ed

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer