Hello all, After sucessful installation, i am trying to run FREESURFER. The conversion to 001.mgz seems to work, but when i want to run recon- all i get the following output:
recon-all -001 ERROR: Flag -001 unrecognized. -001 Linux localhost.localdomain 2.6.9-55.ELsmp #1 SMP Wed May 2 14:04:42 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Sep 17 09:54:41 BRT 2007
Do i forget something before running recon-all like reorientation etc ? Thanks for help, Thomas
Hi Thomas,
try:
recon-all --i <path to 001.mgz> --all --s <subjid> --sd <subjects dir>
On Mon, 17 Sep 2007, Thomas Doring wrote:
Hello all, After sucessful installation, i am trying to run FREESURFER. The conversion to 001.mgz seems to work, but when i want to run recon- all i get the following output:
recon-all -001 ERROR: Flag -001 unrecognized. -001 Linux localhost.localdomain 2.6.9-55.ELsmp #1 SMP Wed May 2 14:04:42 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Sep 17 09:54:41 BRT 2007
Do i forget something before running recon-all like reorientation etc ? Thanks for help, Thomas _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Bruce Fischl -
Thomas Doring