Hi Gina

tkmedit has been deprecated for many years. Can you try using freeview instead?

cheers Bruce

On Tue, 27 Mar 2018, gj wrote:

Hi,

When I launch tkmedit, I only get the "Display" window with no "Tools" window so I don't have any menus (I wanted to overlay a label file -- not sure how I do that from the command line either).

I don't see any errors in the terminal from where I launch tkmedit

---

$ tkmedit -f $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \ -overlay $wd/MPM_rh.FG1.label.nii \ -overlay-reg $FREESURFER_HOME/average/mni152.register.dat \ -fthresh .5 -fmid 1 & [3] 21284 $ tkmedit: Trying to open TOOLBOXES/vcAtlas/NII/MPM_rh.FG1.label.dat Reading /common/apps/freesurfer-6.0.0_x86_64/tktools/tkm_common.tcl Reading /common/apps/freesurfer-6.0.0_x86_64/tktools/tkm_wrappers.tcl Reading /common/apps/freesurfer-6.0.0_x86_64/lib/tcl/fsgdfPlot.tcl Reading /common/apps/freesurfer-6.0.0_x86_64/tktools/tkUtils.tcl

---

Thanks in advance for any help! Gina

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer