Hi all, I got a thin pial thickness when I got a default recon-all -all, which can be got in the attachment. Now I want to get a appropriate result by shrinking the whiter susface. Would you please tell me what option I should add when I run "recon-all -s subject -all -??" Thanks. All the best. Rujing Zha
2014-03-04
charujing123
Hi Rujing
it's tough to tell from a single slice, particularly on an intensity normalized image. When you compare the brain.mgz and the orig.mgz does it look like the intensity normalization is too aggressive? Does it change voxels that look like GM into ones that look like WM
If you upload the subject one of us will take a look
cheers Bruce
On Tue, 4 Mar 2014, charujing123 wrote:
Hi all, I got a thin pial thickness when I got a default recon-all -all, which can be got in the attachment. Now I want to get a appropriate result by shrinking the whiter susface. Would you please tell me what option I should add when I run "recon-all -s subject -all -??" Thanks. All the best. Rujing Zha 2014-03-04
charujing123
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
charujing123