External Email - Use Caution
Hello,
I've run recon-all on patient T1s acquired at different timepoints after a neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP Research Associate in Biomedical Magnetic Resonance Imaging The University of Manchester
External Email - Use Caution
Hi Hamied,
I believe you can use mri_segstats (https://secure-web.cisco.com/1t9vh-Oj21vw4Rayc9EasX_SVka7JZBcaU4jDLdDJ7U4SGd...) to generate the stats.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 7:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution Hello,
I've run recon-all on patient T1s acquired at different timepoints after a neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP Research Associate in Biomedical Magnetic Resonance Imaging The University of Manchester
External Email - Use Caution
you can also use our longitudinal stream that improves sensitivity and reliability. Run it after you have run the cross-sectional - it will improve your results considerably
cheers Bruce ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Huang, Yujing YHUANG43@mgh.harvard.edu Sent: Tuesday, June 27, 2023 10:11 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hi Hamied,
I believe you can use mri_segstats (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1eovGsB290kkvlHEu3meckfF-t55GJg91IEIcHZWXLE6-HS...https://secure-web.cisco.com/1t9vh-Oj21vw4Rayc9EasX_SVka7JZBcaU4jDLdDJ7U4SGdAuLh5BS8dLNGVpAf430Gw4__m6BXEnp-Jui9IuuO9MN4XrwpoH_KqirdZeOt1bGzW0cue0R631HMoXuhIMj0_qz2YcWlfGc5V-FzJe22GTCvPQZ6unps7oDItH9JMmeECj7tbwlF0zAw6VMjNuv08F8t38j02uVdA3wQP4hgweClzzaYHuow_GfULkhXhGPO8DzsmrU2MkfZ8qYrsQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_segstats) to generate the stats.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 7:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hello,
I’ve run recon-all on patient T1s acquired at different timepoints after a neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP
Research Associate in Biomedical Magnetic Resonance Imaging
The University of Manchester
External Email - Use Caution
Thank you so much!
Where do I find out how to run the longitudinal stream, please?
Best wishes,
Hamied
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Fischl, Bruce R.,PHD Sent: Tuesday, June 27, 2023 4:00 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution you can also use our longitudinal stream that improves sensitivity and reliability. Run it after you have run the cross-sectional - it will improve your results considerably
cheers Bruce ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@mgh.harvard.edumailto:YHUANG43@mgh.harvard.edu> Sent: Tuesday, June 27, 2023 10:11 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hi Hamied,
I believe you can use mri_segstats (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1DvoR9gsljZsd_tn6iXlHFCEa7oldorHsKL8rE7nOuo8r9Z... [secure-web.cisco.com]https://secure-web.cisco.com/1TUFzz0uyE5moSWPGLU-e8nsCOIhDnHNbOhIggiy3Jbk7CCh9v-jwSkqueuN3hgEWRyObAH00awbdP_0tLM9Y3wcX0uiGWQg8PkrfT613jf7_KE9bKXfrhtqMo_lDudqZWt1ln-rR6aqsFDbvbLAVPxsJjkeQDovFix9RSLPi8BgFeZ4WhxQYyxAirhmLjTOcwoamjTR439_sGYxl-ncwozCkxNrDJJW9v4wRf-qXiqc3kv5HzAX2qGLQt3yAcJuJ9gpYNYFhdsBaoJT9T776izdITnQpA1hEAn7tQ1sp1K96zQph8S_Q1UJY82_c51A_/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2Fsecure-web.cisco.com%2F1t9vh-Oj21vw4Rayc9EasX_SVka7JZBcaU4jDLdDJ7U4SGdAuLh5BS8dLNGVpAf430Gw4__m6BXEnp-Jui9IuuO9MN4XrwpoH_KqirdZeOt1bGzW0cue0R631HMoXuhIMj0_qz2YcWlfGc5V-FzJe22GTCvPQZ6unps7oDItH9JMmeECj7tbwlF0zAw6VMjNuv08F8t38j02uVdA3wQP4hgweClzzaYHuow_GfULkhXhGPO8DzsmrU2MkfZ8qYrsQ%2Fhttps*3A*2F*2Fsurfer.nmr.mgh.harvard.edu*2Ffswiki*2Fmri_segstats__;JSUlJSU!!PDiH4ENfjr2_Jw!CJSENOIlg85DMUpaPAeorq55UZT7VMEmCvA2s0aNUq9w9M9eBiNcF-SClRd_kT4-xhws_cdYA5nxIMcobV_8cY7HUPYEAU3DxQ$) to generate the stats.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 7:12 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hello,
I've run recon-all on patient T1s acquired at different timepoints after a neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP
Research Associate in Biomedical Magnetic Resonance Imaging
The University of Manchester
External Email - Use Caution
Hi Hamied
You can look at
https://secure-web.cisco.com/1bnaZSruaFQGVYR6VQLh6aOpRfUAXWWdFgqdgPextIAFEWs... https://secure-web.cisco.com/15FkmDqn8PH2TrtPz0MNOJ3GsSLi9E-nZojMgQPivW43V7f...
and also recon-all -help and search for longitudinal.
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 11:02 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution Thank you so much!
Where do I find out how to run the longitudinal stream, please?
Best wishes,
Hamied
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Fischl, Bruce R.,PHD Sent: Tuesday, June 27, 2023 4:00 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution you can also use our longitudinal stream that improves sensitivity and reliability. Run it after you have run the cross-sectional - it will improve your results considerably
cheers Bruce ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@mgh.harvard.edumailto:YHUANG43@mgh.harvard.edu> Sent: Tuesday, June 27, 2023 10:11 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hi Hamied,
I believe you can use mri_segstats (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1KKsj4S_pzLppp0LWwzP9RNlWGOfH0UhR3SKmXq0KdAKjz0... [secure-web.cisco.com]https://secure-web.cisco.com/1suY8rCw0HsLnOoUmHI6Sq3MowuajkWPxT4RlPjPnID7I1q0IfB3Tho0cLVUTS7LWQjM8MU5EBwIG2IVlvnLms_dGgXezhUHxGHbriizcwob7DyDteLO_wb21i9BGS6H8bcZ9wAczE9Wgtxx4ryJS7qK8AzXnEQvJIaUz_QynwGlMsbCMAaJF4_bXKp2BxiUyIYAy2kM1fMPOqY8mVZdlInPsah0dEeqyeonTkkyve9VG78ZoM49sZVIDrp9pAWO4DeavEk1i-BGfuB15cLw13O-3BHBNF8oLH5qSj3evoRJI5bbGFGfzltLpPHyzISfz/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2Fsecure-web.cisco.com%2F1t9vh-Oj21vw4Rayc9EasX_SVka7JZBcaU4jDLdDJ7U4SGdAuLh5BS8dLNGVpAf430Gw4__m6BXEnp-Jui9IuuO9MN4XrwpoH_KqirdZeOt1bGzW0cue0R631HMoXuhIMj0_qz2YcWlfGc5V-FzJe22GTCvPQZ6unps7oDItH9JMmeECj7tbwlF0zAw6VMjNuv08F8t38j02uVdA3wQP4hgweClzzaYHuow_GfULkhXhGPO8DzsmrU2MkfZ8qYrsQ%2Fhttps%2A3A%2A2F%2A2Fsurfer.nmr.mgh.harvard.edu%2A2Ffswiki%2A2Fmri_segstats__%3BJSUlJSU%21%21PDiH4ENfjr2_Jw%21CJSENOIlg85DMUpaPAeorq55UZT7VMEmCvA2s0aNUq9w9M9eBiNcF-SClRd_kT4-xhws_cdYA5nxIMcobV_8cY7HUPYEAU3DxQ%24) to generate the stats.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 7:12 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hello,
I've run recon-all on patient T1s acquired at different timepoints after a neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP
Research Associate in Biomedical Magnetic Resonance Imaging
The University of Manchester
External Email - Use Caution
Hi Bruce,
Cool! Thank you so much.
Best wishes,
Hamied
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Fischl, Bruce R.,PHD Sent: Tuesday, June 27, 2023 8:29 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution Hi Hamied
You can look at
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1ikEwoOZ6YvYrJVW9cfIBjKkBuHkEpYhDjvSLJSzQgpm8BJ... [secure-web.cisco.com]https://secure-web.cisco.com/1bGvTcVl-pqupGiGlZNZLRGIXPZBdtfJkuPTO0j7PFX9G6p4jbVa2Z7X0o6jm_6vpuD4jj1pifaAtMpJvQR1M5zzv49MIMHMURIqudafRPcS9UNX0l7RpbEzp66iWb-GIOIRzBNYNY-2I9lsjPO4h76sIfUha6YHoSBgchLpMbPmek0bcTIcD-9j-D867QQdwpfZG_HpqnPCVNQ7iC-JKZKOBDx3RRd5RDm52j7Idks6l0wUDHaUOgrtQF1LmmtxZ6xd2xErDsTCKHiSC1cbWfN6sWMhVTx_BJ796Qjnc2hvBG4Z3KCXaX1ZsvN8jhi7WO1vi6Zj72mevWLKMKSxhpQ/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2Fsecure-web.cisco.com%2F1bnaZSruaFQGVYR6VQLh6aOpRfUAXWWdFgqdgPextIAFEWsy7HWq6OJhv9ZdHFilwH7UUfM6dYKejSIFciVLi0WyO3H5F5Nh7viI-v-nO3CxQ0cpJ0s1hKzp0KNag_NUd3H66ceI10Q0zEqdsxjf-ZKPT723g2Wal4od_ytCV64hneKuM_fQVWY4ovI7CUaX4niF-ogz5UiQLAhzFmijvUEMmseASDPqJdNBIXpNUZ2EQ79AazWWO_PJQbZJf_Rt9Rp_2bEsvzgzVehPMema0Nw%2Fhttps*3A*2F*2Fsurfer.nmr.mgh.harvard.edu*2Ffswiki*2FLongitudinalTwoStageModel__;JSUlJSU!!PDiH4ENfjr2_Jw!Coe9dyPvTFWlvqzzVcZDPTs1ML2yL5mwRAJNENLsKrD5cxpQTAXWf6jElykqbQXVjkPFDA5B89bJMTkytm_QcQDE5FdqPkN6Bw$ MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1lxCHfzN54gm1yyRVEPmhbg7PIxvTwThaEQW89zXYzEixL_... [secure-web.cisco.com]https://secure-web.cisco.com/17I8yCh6Mc9KLTFzd3MgKFO0t4FZ2ZpDWqCsPzkAnWuQF3CAzTeAaLam6yA0I8c0yVdBMU8__G_zB55T8dGC_6LqHh61Z0xzhxas4Nv42UbIs-gDJa2zdJaKm7sb7_DPwSOoDbgRvN5YWmanBJsKc5o-3H5_3z7MlH8Hb7OALVSJ61gZuKMRYu6A1-XXhey0S0xsT6SNoRcwHz5TLWGtG8n8VfBoKnpQ8ByRnHiThG2_6pmbG-EZJ5g7lkwlXiRMpqFhHkEvirdpeOJBDsc7EUfIu5FhILQg3Djjb7kGQRrOVylZRlaMe5ZP8tKBKWDHpSMYuRYeLtYhTGJWJHHeJuw/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2Fsecure-web.cisco.com%2F15FkmDqn8PH2TrtPz0MNOJ3GsSLi9E-nZojMgQPivW43V7f1BpJBwidLDy1sDrQxoj_TW-BUe7nDURMvyYlRc5D8ATytwtfbaT_UbR_CWYpcBjFqmuEF2zCqtIiGa8f_3J0NUf5U5pQ7Ma3ago-5qyU4QeXpbmeOkV2P0GMH6gmvl0K-Km9xFJyhWQKWu0emzXAWfnT5vlpQSBXZz1jEubfMFaO1g4IxAujkNAqte_j7P8VuoE7kCmtUVX_3LLQPKsu7vPukw4Qhjvud77euPlg%2Fhttps*3A*2F*2Fsurfer.nmr.mgh.harvard.edu*2Ffswiki*2FLongitudinalProcessing__;JSUlJSU!!PDiH4ENfjr2_Jw!Coe9dyPvTFWlvqzzVcZDPTs1ML2yL5mwRAJNENLsKrD5cxpQTAXWf6jElykqbQXVjkPFDA5B89bJMTkytm_QcQDE5FfhgobQAg$
and also recon-all -help and search for longitudinal.
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 11:02 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution Thank you so much!
Where do I find out how to run the longitudinal stream, please?
Best wishes,
Hamied
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Fischl, Bruce R.,PHD Sent: Tuesday, June 27, 2023 4:00 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution you can also use our longitudinal stream that improves sensitivity and reliability. Run it after you have run the cross-sectional - it will improve your results considerably
cheers Bruce ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Huang, Yujing <YHUANG43@mgh.harvard.edumailto:YHUANG43@mgh.harvard.edu> Sent: Tuesday, June 27, 2023 10:11 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hi Hamied,
I believe you can use mri_segstats (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1W-PKK0ASWic4qzjrOKq5S-p8QVnSUNTVyEJhXrbn-8TB0s... [secure-web.cisco.com] [secure-web.cisco.com]https://secure-web.cisco.com/1DOIERkGzB6gq3KQxfh2d5Iee2uslsjTVR8aNIhkd_kGhOQ8hK-PayPX0j9sBtNaJYb0_Zxq2gFk8C2GhQcPs9M86yL7pk9eWhl0hP1bw0rAqltUSLBGzReQ3hxyRSpasfqJ_8pjzSXvt_15eR7xqnGBEMiGmTWsYg61DyOeN_nKooJiKViCvN7l9hJUK9ur7uNMxahUZUb0irtvtdlKSyUwwLWVA5TQXlYclQcekFYove2AwAfcxPqotOpPCTvdlHWZgcfRpjqql2Bw9TEUNhdD2vzNfOH5B8en8VvHVuMEyUpMI6uPqu8AMNCiyb03MxWC87AF6wxr5s8oQiG-Brw/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2Fsecure-web.cisco.com%2F1suY8rCw0HsLnOoUmHI6Sq3MowuajkWPxT4RlPjPnID7I1q0IfB3Tho0cLVUTS7LWQjM8MU5EBwIG2IVlvnLms_dGgXezhUHxGHbriizcwob7DyDteLO_wb21i9BGS6H8bcZ9wAczE9Wgtxx4ryJS7qK8AzXnEQvJIaUz_QynwGlMsbCMAaJF4_bXKp2BxiUyIYAy2kM1fMPOqY8mVZdlInPsah0dEeqyeonTkkyve9VG78ZoM49sZVIDrp9pAWO4DeavEk1i-BGfuB15cLw13O-3BHBNF8oLH5qSj3evoRJI5bbGFGfzltLpPHyzISfz%2Fhttps*3A*2F*2Furldefense.com*2Fv3*2F__https*3A*2Fsecure-web.cisco.com*2F1t9vh-Oj21vw4Rayc9EasX_SVka7JZBcaU4jDLdDJ7U4SGdAuLh5BS8dLNGVpAf430Gw4__m6BXEnp-Jui9IuuO9MN4XrwpoH_KqirdZeOt1bGzW0cue0R631HMoXuhIMj0_qz2YcWlfGc5V-FzJe22GTCvPQZ6unps7oDItH9JMmeECj7tbwlF0zAw6VMjNuv08F8t38j02uVdA3wQP4hgweClzzaYHuow_GfULkhXhGPO8DzsmrU2MkfZ8qYrsQ*2Fhttps*2A3A*2A2F*2A2Fsurfer.nmr.mgh.harvard.edu*2A2Ffswiki*2A2Fmri_segstats__*3BJSUlJSU*21*21PDiH4ENfjr2_Jw*21CJSENOIlg85DMUpaPAeorq55UZT7VMEmCvA2s0aNUq9w9M9eBiNcF-SClRd_kT4-xhws_cdYA5nxIMcobV_8cY7HUPYEAU3DxQ*24__;JSUlJSUlJSUlJSUlJSUlJSUlJQ!!PDiH4ENfjr2_Jw!Coe9dyPvTFWlvqzzVcZDPTs1ML2yL5mwRAJNENLsKrD5cxpQTAXWf6jElykqbQXVjkPFDA5B89bJMTkytm_QcQDE5FeHQR8WXw$) to generate the stats.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Hamied Haroon Sent: Tuesday, June 27, 2023 7:12 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Longitudinal structural analysis in FreeSurfer ???
External Email - Use Caution
Hello,
I've run recon-all on patient T1s acquired at different timepoints after a neurological insult, in FreeSurfer v7.3.2
I want to analyse any change in the volume, surface area and average thickness of specific regions across time in each patient. Can I do this in FreeSurfer?
Many thanks.
Best wishes,
Hamied
Dr Hamied A Haroon, MSc, PhD, MInstP
Research Associate in Biomedical Magnetic Resonance Imaging
The University of Manchester
freesurfer@nmr.mgh.harvard.edu
-
Fischl, Bruce R.,PHD -
Hamied Haroon -
Huang, Yujing