Hello,
I am writing a paper for publication in Neuroimage.
I used Freesurfer 4.3 to segment brain anatomy. Lateral ventricles were my focus.
Can someone please tell me what is the correct way to cite Freesurfer in a bibliography? Is there a paper I can cite?
Thank you, John Drozd
John Jan Drozd, M.Sc., Ph.D.
Financial Secretary Knights of Columbus St. Pius X Council 10561 Holy Family Parish
Post-Doctoral Scholar (Fellow) Imaging Department Robarts Research Institute Western University
London, ON, Canada
http://publish.uwo.ca/~jdrozd2 http://kong.apmaths.uwo.ca/~jdrozd/personal.html http://kong.apmaths.uwo.ca/~jdrozd/bio.html http://cfmm.robarts.ca/people/staff/bartha-group/#john
cell phone: 519-282-3340
Hi John
if you are really only looking at the ventricles it would probably be:
for the segmentation: Whole Brain Segmentation: Automated Labeling of Neuroanatomical Structures in the Human Brain, Fischl, B., D.H. Salat, E. Busa, M. Albert, M. Dieterich, C. Haselgrove, A. van der Kouwe, R. Killiany, D. Kennedy, S. Klaveness, A. Montillo, N. Makris, B. Rosen, and A.M. Dale, (2002). Neuron, 33:341-355.
Sequence-Independent Segmentation of Magnetic Resonance Images, Fischl, B., Salat, D.H., van der Kouwe, A.J.W., Makris, N., Ségonne, F., and Dale, A.M. (2004) NeuroImage 23:S69-S84.
Atlas Renormalization for Improved Brain MR Image Segmentation Across Scanner Platforms, Han, X. and B. Fischl, (2007). IEEE Transactions on Medical Imaging, 26(4):479-486.
for skull stripping: A Hybrid Approach to the Skull-Stripping Problem in MRI, Ségonne, F., Dale, A.M., Busa, E., Glessner, M., Salvolini, U., Hahn, H.K., Fischl, B. (2004). NeuroImage, 22:1160-1075.
cheers Bruce
On Sun, 13 Jan 2013, john.drozd@gmail.com wrote:
Hello,
I am writing a paper for publication in Neuroimage.
I used Freesurfer 4.3 to segment brain anatomy. Lateral ventricles were my focus.
Can someone please tell me what is the correct way to cite Freesurfer in a bibliography? Is there a paper I can cite?
Thank you, John Drozd
John Jan Drozd, M.Sc., Ph.D.
Financial Secretary Knights of Columbus St. Pius X Council 10561 Holy Family Parish
Post-Doctoral Scholar (Fellow) Imaging Department Robarts Research Institute Western University
London, ON, Canada
http://publish.uwo.ca/~jdrozd2 http://kong.apmaths.uwo.ca/~jdrozd/personal.html http://kong.apmaths.uwo.ca/~jdrozd/bio.html http://cfmm.robarts.ca/people/staff/bartha-group/#john
cell phone: 519-282-3340
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Bruce,
Thank you very much.
Enjoy your Sunday.
John
On 2013-01-13, at 9:01 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi John
if you are really only looking at the ventricles it would probably be:
for the segmentation: Whole Brain Segmentation: Automated Labeling of Neuroanatomical Structures in the Human Brain, Fischl, B., D.H. Salat, E. Busa, M. Albert, M. Dieterich, C. Haselgrove, A. van der Kouwe, R. Killiany, D. Kennedy, S. Klaveness, A. Montillo, N. Makris, B. Rosen, and A.M. Dale, (2002). Neuron, 33:341-355.
Sequence-Independent Segmentation of Magnetic Resonance Images, Fischl, B., Salat, D.H., van der Kouwe, A.J.W., Makris, N., Ségonne, F., and Dale, A.M. (2004) NeuroImage 23:S69-S84.
Atlas Renormalization for Improved Brain MR Image Segmentation Across Scanner Platforms, Han, X. and B. Fischl, (2007). IEEE Transactions on Medical Imaging, 26(4):479-486.
for skull stripping: A Hybrid Approach to the Skull-Stripping Problem in MRI, Ségonne, F., Dale, A.M., Busa, E., Glessner, M., Salvolini, U., Hahn, H.K., Fischl, B. (2004). NeuroImage, 22:1160-1075.
cheers Bruce
On Sun, 13 Jan 2013, john.drozd@gmail.com wrote:
Hello,
I am writing a paper for publication in Neuroimage.
I used Freesurfer 4.3 to segment brain anatomy. Lateral ventricles were my focus.
Can someone please tell me what is the correct way to cite Freesurfer in a bibliography? Is there a paper I can cite?
Thank you, John Drozd
John Jan Drozd, M.Sc., Ph.D.
Financial Secretary Knights of Columbus St. Pius X Council 10561 Holy Family Parish
Post-Doctoral Scholar (Fellow) Imaging Department Robarts Research Institute Western University
London, ON, Canada
http://publish.uwo.ca/~jdrozd2 http://kong.apmaths.uwo.ca/~jdrozd/personal.html http://kong.apmaths.uwo.ca/~jdrozd/bio.html http://cfmm.robarts.ca/people/staff/bartha-group/#john
cell phone: 519-282-3340
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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freesurfer@nmr.mgh.harvard.edu
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