Dear All,
I am a newbie to freesurfer and I would like to use our in-house built probabilistic atlas(each region as a binary mask and available as nifti files). I would like to create an atlas out of it and use it for our analysis. On searching the previous mailing list I came across a discussion where the volume information was converted into surface information and can be converted to labels and annotations but I couldn't find much documentation on creating an atlas directly from the volume or surface information. It would be nice if someone can point me out if this is possible and some relevant information to continue on it.
Thank you,
Kind regards
Mageshwar Selvakumar, M.Sc
Department of Pharmakologische Bildgebung und Bildanalyse
Friedrich Alexander Universität Erlangen Nürnberg
Office: Fahrstr. 17, 91054 Erlangen
Phone: + 49-9131-8522898
Hi Mageshwar
what kind of an atlas are you talking about? We have multiple atlases for different purposes.
cheers Bruce On Thu, 5 Apr 2018, Mageshwar Selvakumar wrote:
Dear All,
I am a newbie to freesurfer and I would like to use our in-house built probabilistic atlas(each region as a binary mask and available as nifti files). I would like to create an atlas out of it and use it for our analysis. On searching the previous mailing list I came across a discussion where the volume information was converted into surface information and can be converted to labels and annotations but I couldn't find much documentation on creating an atlas directly from the volume or surface information. It would be nice if someone can point me out if this is possible and some relevant information to continue on it.
Thank you,
Kind regards
Mageshwar Selvakumar, M.Sc
Department of Pharmakologische Bildgebung und Bildanalyse
Friedrich Alexander Universität Erlangen Nürnberg
Office: Fahrstr. 17, 91054 Erlangen
Phone: + 49-9131-8522898
freesurfer@nmr.mgh.harvard.edu