The easiest thing is probably to set the output value when running mri_binarize with the --binval option. Eg, left amygdala would be --binval 18

On 10/10/2019 6:09 PM, Gwang-Won Kim wrote:

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Hi there,

I made the 3 ROIs (Thalamus, amygdala, putamen) using "mri_binarize". Then, I opened "FreeView" to show the 3 ROIs (3 volumes). I want to show 3 ROIs as different colors in FreeView. I tried to apply to FreeSurferColorLUT in FreeView but 3 volumes (3 ROIs) have the color of number #1 in FreeSurferColorLUT. How do I assign different number of FreeSurferColorLUT in 3 volumes?

Thank you, Gwang-Won Kim

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