External Email - Use Caution
Dear Surfers, I am trying to run fsfast mkcontrast-sess with octave. I used the following command:
"mkcontrast-sess -analysis ../mkanalysis/ftap.sm05.lh -contrast ftap -a 1 -octave"
I get the output below. I wonder if you could help me out? Am I missing a file or a path?
Thank you so much Lauri Tuominen
INFO: Found 2 Non-Null Conditions INFO: Found 1 Delays Condition Weights: 1.00000000000000000000 0 mkcontrast2 -config ../mkanalysis/ftap.sm05.lh/ftap.config -anadir ../mkanalysis/ftap.sm05.lh -wcond 1.00000000000000000000 0 -sumconds -o ../mkanalysis/ftap.sm05.lh/ftap.mat -prestim 0 -wdelay 1 -octave mkcontrast2 7.1.1 cmtxfile ../mkanalysis/ftap.sm05.lh/ftap.mat nconds 2, wcond 1.00000000000000000000 0 ndelays 1, wdelay 1 ndelays 1, wpsa sumconds 1 sumdelays 0 nircorr 0 TER 0.050000 rdelta rtau cmtxfile ../mkanalysis/ftap.sm05.lh/ftap.mat monly 0 NCond 2 WCond 1.00000000000000000000 0 NDelay 1 WDelay 1 TER 0.050000 sumconds 1 sumdelays 0 nircorr 0 TPreStim 0 RmPreStim 0 rdelta 0 0 rtau 0 0 ndelays 1 CNorm 1 setwdelay 0 setwcond 0 Matlab file is /tmp/mkcontrast2.28236.m ------- octave output -------------------- error: 'mkcontrast2m' undefined near line 1, column 1
Tue 17 Aug 2021 15:04:43 EDT
Hi Lauri, I was able to run this successfully here on 7.2. What version of FS are you using? Can you send
/tmp/mkcontrast2.28236.m
(if still there)? doug
On 8/17/2021 3:10 PM, Lauri Tuominen wrote:
External Email - Use CautionDear Surfers, I am trying to run fsfast mkcontrast-sess with octave. I used the following command:
"mkcontrast-sess -analysis ../mkanalysis/ftap.sm05.lh -contrast ftap -a 1 -octave"
I get the output below. I wonder if you could help me out? Am I missing a file or a path?
Thank you so much Lauri Tuominen
INFO: Found 2 Non-Null Conditions INFO: Found 1 Delays Condition Weights: 1.00000000000000000000 0 mkcontrast2 -config ../mkanalysis/ftap.sm05.lh/ftap.config -anadir ../mkanalysis/ftap.sm05.lh -wcond 1.00000000000000000000 0 -sumconds -o ../mkanalysis/ftap.sm05.lh/ftap.mat -prestim 0 -wdelay 1 -octave mkcontrast2 7.1.1 cmtxfile ../mkanalysis/ftap.sm05.lh/ftap.mat nconds 2, wcond 1.00000000000000000000 0 ndelays 1, wdelay 1 ndelays 1, wpsa sumconds 1 sumdelays 0 nircorr 0 TER 0.050000 rdelta rtau cmtxfile ../mkanalysis/ftap.sm05.lh/ftap.mat monly 0 NCond 2 WCond 1.00000000000000000000 0 NDelay 1 WDelay 1 TER 0.050000 sumconds 1 sumdelays 0 nircorr 0 TPreStim 0 RmPreStim 0 rdelta 0 0 rtau 0 0 ndelays 1 CNorm 1 setwdelay 0 setwcond 0 Matlab file is /tmp/mkcontrast2.28236.m ------- octave output -------------------- error: 'mkcontrast2m' undefined near line 1, column 1
Tue 17 Aug 2021 15:04:43 EDT
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu