Hi FreeSurfer users, I've been running dcmunpack and I get an error that said Found 0 unique series, even though it has dicom files. What does this mean and what could I do to fix the problem? Best, Talia
what is your command line and what is the full terminal output
On 06/15/2016 04:06 PM, Raney, Talia L. wrote:
Hi FreeSurfer users, I've been running dcmunpack and I get an error that said Found 0 unique series, even though it has dicom files. What does this mean and what could I do to fix the problem? Best, Talia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
My command line is dcmunpack -src $dcmdir -targ $homedir/$subj -fsfast -run $run_num restingstate nii.gz f.nii.gz and the output is --------------------------------------- 1 24 restingstate f 0 0 --------------------------------------- Searching for matching files Wed Jun 15 16:34:27 EDT 2016 Wed Jun 15 16:34:27 EDT 2016 Found 65 total files. cat: /imagelist.dat: No such file or directory Found 0 unique series: Patient: Undefined variable.
________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, June 15, 2016 4:08 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Found 0 unique series
what is your command line and what is the full terminal output
On 06/15/2016 04:06 PM, Raney, Talia L. wrote:
Hi FreeSurfer users, I've been running dcmunpack and I get an error that said Found 0 unique series, even though it has dicom files. What does this mean and what could I do to fix the problem? Best, Talia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The problem appears to be
cat: /imagelist.dat: No such file or directory
Not sure what is going on there. Make sure you're not in / when running it or that the output points to /. Try running it with -debug as the first argument and sending the output.
On 06/15/2016 04:36 PM, Raney, Talia L. wrote:
My command line is dcmunpack -src $dcmdir -targ $homedir/$subj -fsfast -run $run_num restingstate nii.gz f.nii.gz and the output is
1 24 restingstate f 0 0
Searching for matching files Wed Jun 15 16:34:27 EDT 2016 Wed Jun 15 16:34:27 EDT 2016 Found 65 total files. cat: /imagelist.dat: No such file or directory Found 0 unique series: Patient: Undefined variable.
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, June 15, 2016 4:08 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Found 0 unique series
what is your command line and what is the full terminal output
On 06/15/2016 04:06 PM, Raney, Talia L. wrote:
Hi FreeSurfer users, I've been running dcmunpack and I get an error that said Found 0 unique series, even though it has dicom files. What does this mean and what could I do to fix the problem? Best, Talia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
This is true, but in other subjects, I never had to create a .dat file while running dcmunpack. It's saying there is no .dat file in the output directory not the input directory. When I run debug, I get this: set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011011917795479165 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 11 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010571512449268924 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 12 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010583933303272479 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 13 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.201407101102248986381669 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 14 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010594423016075195 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 15 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010592916417774565 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 16 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010582919491272059 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 17 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010572916851369549 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 18 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011010926193878749 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 19 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011005416870778120 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 20 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010575424717370596 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 21 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010574417282570174 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 22 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011014419787880208 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 23 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010573920017669969 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 24 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011015914125980837 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 25 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011020417441881046 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 26 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011002913916277073 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 27 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010571062019268713 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 28 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010595417407375612 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 29 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011001923915276659 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 30 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011000418338876030 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 31 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010574917750770385 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 32 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010571926622569133 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 33 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011002418796376866 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 34 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010570681057568524 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 35 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010595925559075823 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 36 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010581417699171432 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 37 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011003920598877493 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 38 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010593916105674985 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 39 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011011425861878959 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 40 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011005915097978329 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 41 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011004918344977911 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 42 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011004417915477700 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 43 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011013913256879999 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 44 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010580425570471016 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 45 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011001416556076448 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 46 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011014916826780419 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 47 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010585422184873104 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 48 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011003415444777284 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 49 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010584922323072895 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 50 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010573418336369760 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 51 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010572423936069345 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 52 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010590424387473524 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 53 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011021422155781464 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 54 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011012426852079374 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 55 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011013420471279792 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 56 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010580918000371221 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 57 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011010415232478536 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 58 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010593431837674776 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 59 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011000913782976235 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 60 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011020919522481256 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 61 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010591916939874147 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 62 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010591415652273938 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 63 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010592441576274365 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 64 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011015419083680629 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue rm -f $dumpfile rm -f /tmp/dcmunpack.dump.21578
set SeriesNos = ( `cat $infofile | awk '{print $2}' | sort -n | uniq` ) set SeriesNos = ( `cat $infofile | awk '{print $2}' | sort -n | uniq` ) cat /autofs/cluster/cagn/1/users/traney/Projects/FC-REVEAL-practice/DEMA65e/imagelist.dat awk {print $2} uniq sort -n cat: /autofs/cluster/cagn/1/users/traney/Projects/FC-REVEAL-practice/DEMA65e/imagelist.dat: No such file or directory echo "Found $#SeriesNos unique series: $SeriesNos" | tee -a $LF echo Found 0 unique series: tee -a /autofs/cluster/cagn/1/users/traney/Projects/FC-REVEAL-practice/DEMA65e/dcmunpack.log Found 0 unique series:
echo "Subject $Patient" Patient: Undefined variable.
It's just weird because it runs for most subjects but not a particular few. Thanks! Best, Talia ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, June 15, 2016 4:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Found 0 unique series
The problem appears to be
cat: /imagelist.dat: No such file or directory
Not sure what is going on there. Make sure you're not in / when running it or that the output points to /. Try running it with -debug as the first argument and sending the output.
On 06/15/2016 04:36 PM, Raney, Talia L. wrote:
My command line is dcmunpack -src $dcmdir -targ $homedir/$subj -fsfast -run $run_num restingstate nii.gz f.nii.gz and the output is
1 24 restingstate f 0 0
Searching for matching files Wed Jun 15 16:34:27 EDT 2016 Wed Jun 15 16:34:27 EDT 2016 Found 65 total files. cat: /imagelist.dat: No such file or directory Found 0 unique series: Patient: Undefined variable.
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, June 15, 2016 4:08 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Found 0 unique series
what is your command line and what is the full terminal output
On 06/15/2016 04:06 PM, Raney, Talia L. wrote:
Hi FreeSurfer users, I've been running dcmunpack and I get an error that said Found 0 unique series, even though it has dicom files. What does this mean and what could I do to fix the problem? Best, Talia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
You don't need a .dat file, it just could not create the file. It was trying to create it in
/autofs/cluster/cagn/1/users/traney/Projects/FC-REVEAL-practice/DEMA65e/
do you have write permissions into that folder?
On 6/15/16 5:01 PM, Raney, Talia L. wrote:
This is true, but in other subjects, I never had to create a .dat file while running dcmunpack. It's saying there is no .dat file in the output directory not the input directory. When I run debug, I get this: set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011011917795479165 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 11 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010571512449268924 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 12 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010583933303272479 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 13 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.201407101102248986381669 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 14 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010594423016075195 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 15 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010592916417774565 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 16 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010582919491272059 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 17 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010572916851369549 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 18 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011010926193878749 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 19 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011005416870778120 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 20 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010575424717370596 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 21 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010574417282570174 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 22 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011014419787880208 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 23 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010573920017669969 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 24 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011015914125980837 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 25 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011020417441881046 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 26 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011002913916277073 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 27 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010571062019268713 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 28 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010595417407375612 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 29 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011001923915276659 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 30 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011000418338876030 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 31 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010574917750770385 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 32 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010571926622569133 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 33 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011002418796376866 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 34 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010570681057568524 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 35 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010595925559075823 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 36 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010581417699171432 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 37 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011003920598877493 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 38 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010593916105674985 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 39 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011011425861878959 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 40 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011005915097978329 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 41 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011004918344977911 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 42 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011004417915477700 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 43 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011013913256879999 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 44 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010580425570471016 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 45 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011001416556076448 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 46 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011014916826780419 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 47 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010585422184873104 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 48 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011003415444777284 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 49 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010584922323072895 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 50 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010573418336369760 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 51 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010572423936069345 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 52 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010590424387473524 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 53 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011021422155781464 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 54 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011012426852079374 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 55 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011013420471279792 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 56 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010580918000371221 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 57 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011010415232478536 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 58 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010593431837674776 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 59 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011000913782976235 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 60 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011020919522481256 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 61 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010591916939874147 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 62 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010591415652273938 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 63 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071010592441576274365 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue @ nth = $nth + 1 ; @ nth = 64 + 1 set filetype = `mri_probedicom --i $f --d filetype` set filetype = `mri_probedicom --i $f --d filetype` mri_probedicom --i /autofs/cluster/cagn/1/users/dcm/DEMA65e/cdrom/DICOM_ScanDirs/024_ge_functionals_128_32ch/TrioTim-35162-20140710-100150-451000_MR.1.3.12.2.1107.5.2.32.35162.2014071011015419083680629 --d filetype if ( $filetype == notdicom ) continue ; if ( notdicom == notdicom ) continue continue rm -f $dumpfile rm -f /tmp/dcmunpack.dump.21578
set SeriesNos = ( `cat $infofile | awk '{print $2}' | sort -n | uniq` ) set SeriesNos = ( `cat $infofile | awk '{print $2}' | sort -n | uniq` ) cat /autofs/cluster/cagn/1/users/traney/Projects/FC-REVEAL-practice/DEMA65e/imagelist.dat awk {print $2} uniq sort -n cat: /autofs/cluster/cagn/1/users/traney/Projects/FC-REVEAL-practice/DEMA65e/imagelist.dat: No such file or directory echo "Found $#SeriesNos unique series: $SeriesNos" | tee -a $LF echo Found 0 unique series: tee -a /autofs/cluster/cagn/1/users/traney/Projects/FC-REVEAL-practice/DEMA65e/dcmunpack.log Found 0 unique series:
echo "Subject $Patient" Patient: Undefined variable.
It's just weird because it runs for most subjects but not a particular few. Thanks! Best, Talia ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, June 15, 2016 4:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Found 0 unique series
The problem appears to be
cat: /imagelist.dat: No such file or directory
Not sure what is going on there. Make sure you're not in / when running it or that the output points to /. Try running it with -debug as the first argument and sending the output.
On 06/15/2016 04:36 PM, Raney, Talia L. wrote:
My command line is dcmunpack -src $dcmdir -targ $homedir/$subj -fsfast -run $run_num restingstate nii.gz f.nii.gz and the output is
1 24 restingstate f 0 0
Searching for matching files Wed Jun 15 16:34:27 EDT 2016 Wed Jun 15 16:34:27 EDT 2016 Found 65 total files. cat: /imagelist.dat: No such file or directory Found 0 unique series: Patient: Undefined variable.
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Wednesday, June 15, 2016 4:08 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Found 0 unique series
what is your command line and what is the full terminal output
On 06/15/2016 04:06 PM, Raney, Talia L. wrote:
Hi FreeSurfer users, I've been running dcmunpack and I get an error that said Found 0 unique series, even though it has dicom files. What does this mean and what could I do to fix the problem? Best, Talia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
Douglas N Greve
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Raney, Talia L.