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Dear FreeSurfer experts,
we would like to use the 'Segmentation of hippocampal subfields and nuclei of the amygdala' feature [1] that is available in the development version of FreeSurfer.
However, we already pre-processed all subjects from the study using recon-all from FreeSurfer v6.0 stable.
Can we apply the hippocampal subfields methods to the data pre-processed with the stable version, or should we run recon-all again using the dev version before we proceed?
Thanks,
Tim
[1] https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmy...
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
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Nope, please don't rerun the recon-all with dev. Just run the hippo+amyg module on the 6.0-reconned data. Cheers, /Eugenio
freesurfer@nmr.mgh.harvard.edu