?h.aparc.stats gives an average in the different labels. You could also export the labels, then it should give - on average - the same results.

Best, Martijn

On Wed, Feb 22, 2012 at 9:51 PM, Antonella Kis atorok9@yahoo.com wrote:

Dear Marijn,

Thanks again for your help. I tried to do the conversion but I am not sure if I chooses the right files because I am not getting the same values like the one from my lh.aparc.stats stats file. I need to get as output the NumVert and ThickAvg as a table or ascii file.

Thank you for helping again. Antonella

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*From:* Martijn Steenwijk martijnsteenwijk@gmail.com *To:* Antonella Kis atorok9@yahoo.com *Sent:* Wednesday, February 22, 2012 2:34 PM

*Subject:* Re: [Freesurfer] Freesurfer and MATLAB

For the number of vertices, you could use mris_convert and convert the surface files (overlapped with thicknesses) to ascii.

Best, Martijn

On Wed, Feb 22, 2012 at 8:16 PM, Antonella Kis atorok9@yahoo.com wrote:

Hi Martijn,

Thank you very much for your prompt response. I knew about this option but it doesn't let me get the no. of vertices just the thickenss which I want but I need the no. of vertices too. Can you please help?

MAny thanks. AK

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*From:* Martijn Steenwijk martijnsteenwijk@gmail.com *To:* Antonella Kis atorok9@yahoo.com *Cc:* "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu *Sent:* Wednesday, February 22, 2012 1:11 PM *Subject:* Re: [Freesurfer] Freesurfer and MATLAB

You could store them as a table (aparcstats2table), you can open the resulting text file with matlab.

Best, Martijn

On Wed, Feb 22, 2012 at 6:59 PM, Antonella Kis atorok9@yahoo.com wrote:

Dear All,

Is there a way that I can open my rh.aparc.stats files (saved in stats after recon-all) in MATLAB as a matrix? I would like to concatenate all the rh.aparc.stats files from all my subjects.

Many thanks, Antonella

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